Results for "Seq"
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Comment on "Tools for Differential expression analysis"
...expression analysis, including: DESeq2: This R package is widely used for analyzing RNA-Seq data. It uses a negative bino...ression analysis of microarray and RNA-Seq data. It uses a linear model...ifferential expression analysis of RNA-Seq data. It uses a method based...406 days ago
Comment on "Sibelia: A comparative genomics tool"
...t occur exactly once in each input sequence, such blocks are used as...able for analysis. Please note that sequences that do not contain an...he table designate following: 1. Seq_id -- ID of the sequence, tha...at occur exactly once in each input sequence. This option assumes th...1270 days ago
- kallisto can process either single-end or paired-end reads. The default running mode is paired-end and requires an even number of FASTQ files represented as pair...
1346 days ago
Comment on "Tools for Searching Repeats And Palindromic Sequences"
Check out this GAP-Seq: a method for identification of DNA palindromes https://bmcgenomics.biomedcentral.com/articles/10.1186/1471-2164-15-3941520 days ago
Comment on "Next Generation Sequencing (NGS) Tutorials"
Informatics for RNA-seq: A web resource for analysis on the cloud https://github.com/griffithlab/rnaseq_tutorial?1559 days ago
- ...-Example usage:$ mashmap -r ref.fa -q seq.fq [OPTIONS]$ mashmap --rl reference_files_list.txt -q seq.fq [OPTIONS] Available optio...ping segment length [default : 5,000] sequences shorter than segment le...computes best mappings for each query sequence 'one-to-one' computes be...
2107 days ago
Comment on "Running Trinity on RNA-seq !"
...y of your organism based on your assembled transcripts and the input RNA-Seq data. Such studies might incl...vides direct support for several DE analysis methods, including edgeR, DESeq2, Limma/Voom, and ROTS....2108 days ago
- ...ty control tool for high-throughput sequence data (Babraham Institute...rol and analysis of high-throughput sequence data. HTSeq HTSeq....from numerous tools (FastQC, HTSeq, RSeQC, Tophat, STAR, others....quencies, read length, and frequent sequences. Produces graphical out...
2122 days ago
Comment on "Run miniasm assembler on nanopore reads !"
...:288.250*12.60] mapped 101108 sequences[M::worker_pipeline::370...:1120.649*18.13] mapped 58892 sequences[M::worker_pipeline::119...:2271.864*18.14] mapped 55098 sequences[M::worker_pipeline::234...red 132126233 hits and 760720 sequences (8675939030 bp)[M::main...2266 days ago
Comment on "Does anyone have Nanopore latest updates?"
Nanopore sequencing has made tremendrous progress- NEWS from Lon...in the London calling 2015 conference that Nanopore seq has made great progress inclu...you purchase any old, I mean current generation NGS sequencers, particularly the AMC...3258 days ago
