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Results for "Sequence"

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• • Rahul Nayak@rahul

  

  Get the sequences using coordinates in bed file. $ bedtools getfasta -fi input_file.fa -bed regions_file.bed #Bed #Extract #Sequence #bedtools

  Tags: Bed, Extract, Sequence, bedtools

  2227 days ago

• • BioStar@biostar

  

  The aim of this program suite is to support checks of #Sequence #Variant #Nomenclature according to the guidelines of the #Human #Genome #Variation Society. https://www.mutalyzer.nl/

  Tags: Sequence, Variant, Nomenclature, Human, Genome, Variation

  1903 days ago

• • Jit@jit.aber

  

  Alignment-free sequence comparison: benefits, applications, and tools https://genomebiology.biomedcentral.com/articles/10.1186/s13059-017-1319-7 #Alignment #Sequence

  Tags: Alignment, Sequence

  1701 days ago

• • Neelam Jha@neelam

  

  A powerful #multiple #sequence #alignment #browser http://wasabiapp.org/

  Tags: multiple, sequence, alignment, browser

  2950 days ago

• • Abhimanyu Singh@abhimanyu

  

  #Extract a #sequence from #multi-fasta file: $ perl -ne 'if(/^>(\S+)/){$c=grep{/^$1$/}qw(id1 id2)}print if $c' fasta.file

  Tags: Extract, sequence, multi

  2593 days ago

• • Abhimanyu Singh@abhimanyu

  

  #Random #sequence generator with #perloneliner : $ perl -e '$x=int(rand(1000)); printf( "chr1\t%s\t%s", $x, $x + 10)'

  Tags: Random, sequence, perloneliner

  2593 days ago

• • Jit@jit.aber

  

  #Remove a #sequence by id from multifasta: cat vaga.fa | awk '{if (substr($0,1) == ">scaffold_1 1087316 bp") censor=1; else if (substr($0,1,1) == ">") censor=0; if (censor==0) print $0}' > fixed.fasta

  Tags: Remove, sequence

  2317 days ago

• • Manisha Mishra@manisha

  

  Extract fasta with Ids. $ perl -ne 'if(/^>(\S+)/){$c=grep{/^$1$/}qw(id1 id2)}print if $c' fasta.file #extract #fasta #sequence #ids

  Tags: extract, fasta, sequence, ids

  2193 days ago

• • Jit@jit.aber

  

  Recommendations for the description of #sequence #variants https://www.hgvs.org/mutnomen/recs.html

  Tags: sequence, variants

  1925 days ago

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