Results for "Sequence"

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  • Consed--A Finishing Package (BAM File Viewer, Assembly Editor, Autofinish, Autoreport, Autoedit, and Align Reads To Reference Sequence)

    Supports Illumina, 454, other Next-Gen and Sanger Reads and allows mixtures of these read types Consed includes BamScape which can view bam files with unlimited numbers of reads. BamScape can bring up consed to edit reads and the reference sequence in targeted regions. Consed is compatible wi...

    Tags: Consed, Finishing, Package, BAM, Viewer, Assembly, Editor, Autofinish, Autoreport, Autoedit, Align, Reads, Reference, Sequence

    1512 days ago

  • Sequence Tube Maps: displays multiple genomic sequences in the form of a tube map

    A JavaScript module for the visualization of genomic sequence graphs. It automatically generates a "tube map"-like visualization of sequence graphs which have been created with vg. (https://github.com/vgteam/vg) Link to working demo: https://vgteam.github.io/sequenceTubeMap/

    Tags: Sequence, Tube, Maps, displays, multiple, genomic, sequences, tube, map, graphmap

    1479 days ago

  • medaka: Sequence correction provided by ONT Research

    medaka is a tool to create a consensus sequence from nanopore sequencing data. This task is performed using neural networks applied from a pileup of individual sequencing reads against a draft assembly. It outperforms graph-based methods operating on basecalled data, and can be competitive w...

    Tags: medaka, Sequence, correction, ONT, Research, nanopore

    1411 days ago

  • Sequence Ontology Bioinformatics Analysis (SOBA) tool to provide a simple statistical and graphical summary of an annotated genome

    We have developed the Sequence Ontology Bioinformatics Analysis (SOBA) tool to provide a simple statistical and graphical summary of an annotated genome. We envisage its use during annotation jamborees, genome comparison and for use by developers for rapid feedback during annotation software deve...

    Tags: Sequence, Ontology, Bioinformatics, Analysis, SOBA, tool, statistical, graphical, summary, annotated, genome

    1346 days ago

  • DnaSP: DNA Sequence Polymorphism, is a software package for the analysis of DNA polymorphisms

    DnaSP, DNA Sequence Polymorphism, is a software package for the analysis of DNA polymorphisms using data from a single locus (a multiple sequence aligned -MSA data), or from several loci (a Multiple-MSA data, such as formats generated by some assembler RAD-seq software). DnaSP can estimate severa...

    Tags: DnaSP, DNA, Sequence, Polymorphism, software, package, analysis, DNA, polymorphisms

    1219 days ago

  • SeqFu: A Suite of Utilities for the Robust and Reproducible Manipulation of Sequence Files

    A general-purpose program to manipulate and parse information from FASTA/FASTQ files, supporting gzipped input files. Includes functions to interleave and de-interleave FASTQ files, to rename sequences and to count and print statistics on sequence...

    Tags: SeqFu, Suite, Utilities, Robust, Reproducible, Manipulation, Sequence, Files

    759 days ago

  • Tools for Sequence translation !

    BOrf - https://github.com/betsig/borf CodAn - https://github.com/pedronachtigall/CodAn EMBOSS-Sixpack - https://www.ebi.ac.uk/Tools/st/emboss_sixpack/ esl-translate - http://hmmer.org/, https://github.com/EddyRivasLab/easel GeneMarkS-T - ...

    Tags: Sequence, Translation

    507 days ago

  • NCBIBLAST+ 2.14.1 now available

    #NCBIBLAST+ 2.14.1 now available with improved documentation, faster and more reliable database downloads, and some bug fixes.  Check out the changes they made. They added the cleanup-blastdb-volumes.py script to remove unused BLAST database volumes. Read the documentation h...

    Tags: NCBIBLAST, blast, NCBI, Homology, Search, Sequence, Update, Available

    212 days ago

  • Chemical Elements of Bioinformatics

    You must be familiar with periodic table and colour pattern, but this time you are going to amaze by new elements table by Eagle genomics. Just check it out and have fun :) http://elements.eaglegenomics.com/

    Tags: bioinformatics, tools, sequence, blast

    3837 days ago

  • A powerful #multiple #sequence #alignment #browser http://wasabiapp.org/

    Tags: multiple, sequence, alignment, browser

    2929 days ago