Results for "Sequence"

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  • NCBI PSI-BLAST Tutorial

    http:--www.biotechnology.jhu.edu- Tutorial for PSI-BLAST, an extension of BLAST that uses matrix algebra. BLAST is a cornerstone bioinformatics tool at NCBI. BLAST is the Basic Local Alignment Search tool and will protein and DNA sequences that are related to a sequence that the user provides.

    Tags: PSI Blast, BLAST, NCBI, Alignment, Search, Sequence

    1376 days ago

  • Creates 100 random DNA sequences with 20 residues. sapply(1:100, function(x) paste(sample(c("A","T","G","C"), 20, replace=T), collapse="")) #R #Random #Sequence #DNA #Script

    Tags: R, Random, Sequence, DNA, Script

    1093 days ago

  • R getting strong for NGS analysis http://manuals.bioinformatics.ucr.edu/home/ht-seq #Packages #NGS #R #Bioconductor #Bowtie #Sequence #Analysis #SNP

    Tags: Packages, NGS, R, Bioconductor, Bowtie, Sequence, Analysis, SNP

    1093 days ago

  • Sequence analysis (methods) http://www.biomedcentral.com/bmcbioinformatics/sections/sequence_analysis_method #Methods #NGS #Sequence #Bioinformatics

    Tags: Methods, NGS, Sequence, Bioinformatics

    1024 days ago

  • Sequence Viewer: Download Transcripts, Exons and Proteins

    How to download FASTA sequence for certain gene features while in the NCBI's Sequence Viewer. Sequence Viewer homepage: www.ncbi.nlm.nih.gov/projects/sviewer/ Sequence Viewer playlist: https://www.youtube.com/playlist?list=PL76D7EE6A6A8AC1C3

    Tags: NCBI, Gene, Sequence, Viewer

    988 days ago

  • MAP2: multiple alignment of syntenic genomic sequences http://nar.oxfordjournals.org/content/33/1/162.full #Alignment #Synteny #Sequence

    Tags: Alignment, Synteny, Sequence

    982 days ago

  • Sequence analysis http://bio.lundberg.gu.se/courses/ht03/bio1/bio1_e2b.html #Sequence #Alignment #Algorithms #C #C++

    Tags: Sequence, Alignment, Algorithms, C, C

    928 days ago

  • Seqloc: Handle sequence locations for bioinformatics https://hackage.haskell.org/package/seqloc-0.6 #Sequence #Location #Package

    Tags: Sequence, Location, Package

    918 days ago

  • seqloc 0.6

    The Bio.SeqLoc modules in seqloc are designed to represent positions and locations (ranges of positions) on sequences, particularly nucleotide sequences. My original motivation for writing these packages was handing the locations of genes in eukaryotic genomes. Handle sequence locations for bioi...

    Tags: Bioinformatics, Computational Biology, Education, Sequence, Seq, Genome, View

    884 days ago

  • Software packages for next gen sequence analysis

    Integrated solutions * CLCbio Genomics Workbench - de novo and reference assembly of Sanger, Roche FLX, Illumina, Helicos, and SOLiD data. Commercial next-gen-seq software that extends the CLCbio Main Workbench software. Includes SNP detection, CHiP-seq, browser and other features. Commercial. Wi...

    Tags: Bioinformatics, Computational Biology, Education, Assemblied, Sequence, Genome, Align, Software, SNP

    710 days ago