Results for "Sequences"

Tags

  • LAST

    LAST can: Handle big sequence data, e.g: Compare two vertebrate genomes Align billions of DNA reads to a genome Indicate the reliability of each aligned column. Use sequence quality data properly. Compare DNA to proteins, with frameshifts. Compare PSSMs to sequences Calculate th...

    Tags: LAST, Bioinformatics, Mapping, Match, Align, Sequences, Compare

    2941 days ago

  • D-GENIES: A tool for Dotplot large Genomes in an Interactive, Efficient and Simple way

    D-GENIES – for Dotplot large Genomes in an Interactive, Efficient and Simple way – is an online tool designed to compare two genomes. It supports large genome and you can interact with the dot plot to improve the visualisation. We use minimap version 2 to align the two genomes. Then, the PAF f...

    Tags: D-GENIES, tool, Dotplot, large, Genomes, Interactive, Efficient, Simple, DNA, Sequences, Visualization

    2117 days ago

  • S-plot2: Rapid Visual and Statistical Analysis of Genomic Sequences

    S-plot2 creates an interactive, two-dimensional heatmap capturing the similarities and dissimilarities in nucleotide usage between genomic sequences (partial or complete). In S-plot2, whole eukaryotic chromosomes and smaller prokaryotic genomes can be efficiently compared. The tool includes funct...

    Tags: S-plot2, Rapid, Visual, Statistical, Analysis, Genomic, Sequences

    2004 days ago

  • SISRS: Site Identification from Short Read Sequences

    Next-gen sequence data such as Illumina HiSeq reads. Data must be sorted into folders by taxon (e.g. species or genus). Paired reads in fastq format must be specified by _R1 and _R2 in the (otherwise identical) filenames. Paired and unpaired reads must have a fastq file extension.

    Tags: SISRS, Site, Identification, Short, Read, Sequences

    1947 days ago

  • gVolante: Completeness Assessment of Genome/Transcriptome Sequences

    A brand-new web server, gVolante, which provides an online tool for (i) on-demand completeness assessment of sequence sets by means of the previously developed pipelines CEGMA and BUSCO and (ii) browsing pre-computed completeness scores for publicly available data in its database section

    Tags: gVolante, Completeness, Assessment, Genome, Transcriptome, Sequences

    1902 days ago

  • gVolante: Completeness Assessment of Genome/Transcriptome Sequences

    gVolante provides an online interface for completeness assessment of user’s original or publicly available sequence datasets as well as for browsing results of completeness assessment performed on publicly available genome and transcriptome assemblies.

    Tags: gVolante, Completeness, Assessment, Genome, Transcriptome, Sequences

    1696 days ago

  • Predict Gene Ontology with sequences !

    PANNZER (Protein ANNotation with Z-scoRE) is a fully automated service for functional annotation of prokaryotic and eukaryotic proteins of unknown function. The tool is designed to predict the functional description (DE) and GO classes. PANNZER2 processes bacterial proteomes in minutes and ...

    Tags: Predict, Gene, Ontology, Sequences, GO

    1360 days ago

  • KAST

    Perform Alignment-free k-tuple frequency comparisons from sequences. This can be in the form of two input files (e.g. a reference and a query) or a single file for pairwise comparisons to be made.

    Tags: KAST, Alignment, K-tuple, Compare, Genome, Sequences

    764 days ago

  • Nucl2Vec: Local alignment of DNA sequences using Distributed Vector Representation

    We demonstrate a novel approach forlocal alignment of DNA reads with respect to reference genome.For this process we have used Skip-gram model for creatingencoding(Nucl2Vec) and k-nearest neighbor for the alignment.With our new approach we have reduced computation cost forlocal alignment , while ...

    Tags: Nucl2Vec, Local, alignment, DNA, sequences, Distributed, Vector, Representation

    1109 days ago

  • ACANA: An accurate and consistent alignment tool for DNA sequences

    ACANA is an accurate and consistent alignment tool for DNA sequences. ACANA is specifically designed for aligning sequences that share only some moderately conserved regions and/or have a high frequency of long insertions or deletions. It attempts to combine the best of local and global alignment...

    Tags: ACANA, accurate, alignment, tool, DNA, sequences

    2304 days ago