Results for "Sequencing"
Bio-Scripts
...Tools that process sequencing machine data, e.g. Illumina base calls, and detect sequencing level attributes, e.g. adapte...Collect whole genome sequencing-related metrics. Colle...pected allele fractions in pooled sequencing CalculateGenotypePosteri...2065 days ago
Bash script to download SRA file !
...sequence data (in paired FASTQ format) from the archive. fastq-dump is in the SRA toolkit. It allows directly downloading data from a particular sequencing run ID fastq-dump --split-...1549 days ago
To convert just one specific read group to fastq
# Stop script on error. set -uex # The SRR BioProject number for the sequencing data. PROJECT=PRJNA257197 # The number of datasets to subselect from the project. N=5 # Get t...1532 days ago
Pack a perl program with their dependencies on Ubuntu !
...github.com - SvABA is a method for detecting structural variants in sequencing data using genome-wide local...rizontal gene co-transfer (HGcoT) between bacteria using whole-genome sequencing (WGS) data. It is particularl...1501 days ago
- ...TCATTCACAT CACATGAGCT GTCCTGAACA GAGCTGATCA TCTTTCAGAT AGCCGGACCT TATGATCATT TCATTAGGCG AGGCGGAGCT HINT: There is NO sequencing errors HINT: Overlaps are...
1205 days ago
Install Varscan on Ubuntu / Linux !
#Varscan is a java program designed to call variants in sequencing data. It was developed at the Genome Institute at Washington University and is hosted on github. To use Varscan we sim...813 days ago
