Results for "Short"
Blogs
List of bioinformatics packages for NGS analysis !
Package suites gather software packages and installation tools for specific languages or platforms. We have some for bioinformatics software. Bioconductor &nda...1133 days ago
The DNA of a Successful Bioinformatician decoded !!!
...a little harder compared to other professional categories. The fact - for instance - that the technology cycle in the bioinformatics world is very short, the actual knowledge becomes...3697 days ago
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Bookmarks
Comparison of Short Read De Novo Alignment Algorithms
Excellent article to introduce different sequencing methods along with tools for de novo assembly of sequencing reads and their relevant references. Title: Comparison of Short Read De Novo Alignment Algorithms Author: Nikhil Gopal3900 days ago
Latest paper on comparison of mapping tools
A. Hatem, D. Bozdag, A. E. Toland, U. V. Catalyurek "Benchmarking short sequence mapping tools" BMC Bioinformatics, 14(1):184, 2013. http://bmi.osu.edu/hpc/software/benchmark/ http...3887 days ago
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Files
Bioinformatics approach to Boar Taint
...es belong to Norwegian Landrace (NL) and Duroc (D) pigs with varied boar taint levels were done in Illumina HiSeq2000 to >10X average coverage. Short reads generated from these sa...3780 days ago
Evaluation of genome assembly software based on long reads
...er, Smartdenovo, Abruijn, Ra, DBG2OLC, Spades and Cerulean. The first 8 software use only long reads, while the 3 last software can merge long and short reads1910 days ago
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Pages
Monitor running jobs on Linux server
...; load average: 0.00, 0.00, 0.00The first line tells you the current time, how long the machine has been up, how many users are logged in, and the short/medium/long-term compute load...3611 days ago
A guide for complete R beginners :- R Syntax
...lsquo;t test’ NOTE: quotes are needed for search strings, they are not needed when referring to data objects or function names. There is a short cut for help, ? shows the he...3348 days ago
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Top-level pages
- ...bmitting and updating entries to the GenBank, EMBL, or DDBJ sequence databases. It is capable of handling simple submissions that contain a single short mRNA sequence, and complex su...
3932 days ago
Bioinformatics Courses Around the World
...bsp;, UK Bioinformatics Centre , School of Pathology OUBC training courses Part-time Modular MSc in Bioinformatics and regular short professional updating courses...3933 days ago
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Wire posts
News
- ...ished paper (entitled "Microbial Production of Short-chain Alkanes") in Nature jou...to provide the fatty acid derivatives that are shorter than normal intracellular f...ovel synthetic pathway for the biosynthesis of short-chain alkanes. This allowed t...
3860 days ago
Accelerating Biology 2014:The Next Wave (18-22 February, 2014)
...ables sequencing of hundreds of genomes at an extremely rapid rate and at a significantly lower cost. The availability of hundreds of genomes in a short time is expected to revolutio...3835 days ago
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Opportunity posts
CSIR-INSTITUTE OF GENOMICS & INTEGRATIVE BIOLOGY
...sult awaited status or after due date. The email will be sent to the short listed candidates. No TA/D...cy. Candidates will have an option to give reply in Hindi. Note: The shortlisted candidates, who will re...3892 days ago
Research Associate @ ICGEB, New Delhi.
...of this advertisement. Kindly mark the email with subject “Application for BIF-RA-2013” Closing date for applications: 18 October 2013 Only short listed candidates will be inv...3851 days ago
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ResearchLabs posts
- ...called non-coding RNAs that are not translated into proteins. Many of them act as potent modifiers of gene expression. miRNAs are a class of such short non-coding RNAs. They regulat...
3026 days ago
- ...del organism to study evolution, stress responses, the biology of aging, and maternal effects. Rotifers are small, easy to grow in the lab, have a short lifespan, and share many of t...
414 days ago
Fun
Introduction to programming. Write short programs that generate graphics and animation.
Introduction to programming. Write short programs that generate graphics and animation. http://funprogramming.org/3541 days ago
Video
- A short overview of Bioinformatics applications brought to you by the University of South Dakota Computer Science Department
3905 days ago
A Brief Introduction to Genetics
A Brief Introduction to Genetics is a short documentary film that explores the history of genetics & genomics and the underlying concepts that provide the foundational knowledge that...3893 days ago
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Bio-Scripts
Resume the MIRA assembler run !
...Change working directory -r / --resume Resume an interupted assembly -h / --help Print short help and exit -v / --versi...1725 days ago
- ...---------------------------------------------------------------------- Short Variant Discovery: Tools that perform variant calling and genotyping for short variants (SNPs, SNVs and Inde...
2065 days ago
- +3 more Bio-Scripts
Groups
Bioinformatics Skill Development Program (BSDP)
...OL), a bioinformatics education portal, began offering one and two week short courses in bioinformatics, ge...users of these advanced technologies.For two years, the series offered short courses in bioinformatics, ge...3698 days ago
Tags
Meraculous: De Novo Genome Assembly with Short Paired-End Reads
We describe a new algorithm, meraculous, for whole genome assembly of deep paired-end short reads, and apply it to the assembly of a dataset of paired 75-bp Illumina reads derived from the 15.4 megabase genome of the haploid yeast Pichia stipitis. More than 95% of the genome is recovered, wi...Tags: Meraculous, De Novo, Genome, Assembly, Short, Paired-End, Reads
2361 days ago
GAPPadder: A Sensitive Approach for Closing Gaps on Draft Genomes with Short Sequence Reads
This software is provided ``as is” without warranty of any kind. In no event shall the author be held responsible for any damage resulting from the use of this software. The program package, including source codes, executables, and this documentation, is distributed free of charge. If you u...Tags: GAPPadder, Sensitive, Approach, Closing, Gaps, Draft, Genomes, Short, Sequence, Reads, Genome, Assembly
2173 days ago
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Comments
Comment on "Short-read assembly using Spades !"
Short-read assembly is the process of con...ome sequence from a large number of short sequencing reads. SPAdes (St....ler) is a popular software tool for short-read assembly. Here are the g...These are the general steps for short-read assembly using SPAdes. H...406 days ago
- ...e of them: ART: The ART (short for Artificial Read Simulator...wgsim is another widely used short read simulator that generates...ee download. PIRS: PIRS (short for Profile-based Illumina pa...st a few examples of the many short read simulators available for...
406 days ago
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