List of gene ontology software and tools
...redundant GO terms. The remaining terms can be visualized in semantic similarity-based scatterplots, interacti...lab GOssTo GOssTo and GOssToWeb are tools to calculate the semantic similarity between genes or terms in the...3663 days ago
New Machine Learning Packages in R
...ng, Study-Specific Ensembling (Trained-on-Observed-Studies Ensemble), the Study Strap, and the Covariate-Matched Study Strap. and offers over 20 similarity measures. See Kishida, e...1453 days ago
YASS :: genomic similarity search tool
YASS is a genomic similarity search tool, for nucleic (DNA/RNA) sequences in fasta or plain text form...TERNHUNTER, BLASTZ/LASTZ, LAST ...), YASS uses seeds to detect potential similarity regions, and then tries to ex...2878 days ago
2827 days ago
Bio++ : C Language libraries for your biological need
...me, polarity and charge + physico-chemical distance (Miyata and Grantham) + import from any AAIndex entry.Consensus sequences.Pairwise alignment.Similarity score computation.Sequence bo...3901 days ago
3900 days ago
Useful Links for Bioinformaticians
...lossary The Gene-School Glossary Glossary of Genetic Terms Similarity Search Tutorials An Overvi...ormation Visualization of Multivariate Data from Biological Sequence Similarity Searches Feel free to add...3083 days ago
Complete genome sequence of Wuhan seafood market pneumonia virus is out !
...enome sequences from affected individuals are very very close to each other. Several are identical and none has more than 5 differences (99.983% similarity). This strongly suggests that...1509 days ago
3838 days ago
Blast result parser with Perl and Bioperl
...the hit sequence in the alignment print OUT $hsp->start('hit') . "\t" . $hsp->end('hit') . "\t"; # get the similarity value printf OUT "%.1f"...2867 days ago
How to search for small peptide (hexapeptide) sequence ?
How to search for small peptide (hexapeptide) sequence which are modified by single D-amino acid replacement from parent peptide sequence? Which database or tool is available to find available sequence similarity?? The parent peptide sequence is a part of human protein with all six L-amino acid ...Tags: Hexapeptide, Sequence, Search, Peptide, Database, Tool, Find, Similarity
3177 days ago
Comment on "Basic command-line to run BLAST"
...e database. It then expands the matches to identify longer regions of similarity, called "alignments," and calculates a score for each alignment that reflects its degree of similarity. BLAST is widely used in bio...374 days ago
2076 days ago