Results for "Similarity"

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  • How to search for small peptide (hexapeptide) sequence ?

    How to search for small peptide (hexapeptide) sequence which are modified by single D-amino acid replacement from parent peptide sequence? Which database or tool is available to find available sequence similarity?? The parent peptide sequence is a part of human protein with all six L-amino acid ...

    Tags: Hexapeptide, Sequence, Search, Peptide, Database, Tool, Find, Similarity

    964 days ago

  • The BLAST parser http://kirill-kryukov.com/study/tools/blast-parser/ #BLAST #Parser #Genome #Match #Sequence #Similarity

    Tags: BLAST, Parser, Genome, Match, Sequence, Similarity

    881 days ago

  • LAST

    LAST can: Handle big sequence data, e.g: Compare two vertebrate genomes Align billions of DNA reads to a genome Indicate the reliability of each aligned column. Use sequence quality data properly. Compare DNA to proteins, with frameshifts. Compare PSSMs to ...

    Tags: Bioinformatics, Chromosome, Genome, NGS, Align, Compare, Similarity

    433 days ago

  • pyScaf

    pyScaf orders contigs from genome assemblies utilising several types of information: paired-end (PE) and/or mate-pair libraries (NGS-based mode) long reads (NGS-based mode) synteny to the genome of some related species (reference-based mode) Scaffolding  In reference-based mode, pyS...

    Tags: Bioinformatics, Chromosome, Genome, NGS, Align, Compare, Similarity, Scaffolding

    433 days ago

  • Selecting the Right #Similarity-Scoring #Matrix https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3848038/

    Tags: Similarity, Matrix

    354 days ago

  • MOSS: A System for Detecting Software Similarity

    Moss (for a Measure Of Software Similarity) is an automatic system for determining the similarity of programs. To date, the main application of Moss has been in detecting plagiarism in programming classes. Since its development in 1994, Moss has been very effective in this role. The algorithm beh...

    Tags: MOSS, System, Detecting, Software, Similarity, detect, plagiarism, programming

    78 days ago

  • PLAST: A fast, accurate and NGS scalable bank-to-bank sequence similarity search tool

    PLAST is a fast, accurate and NGS scalable bank-to-bank sequence similarity search tool providing significant accelerations of seeds-based heuristic comparison methods, such as the Blast suite of algorithms. Relying on unique software architecture, PLAST takes full advantage of recent multi-core...

    Tags: PLAST, fast, accurate, NGS, scalable, bank-to-bank, sequence, similarity, search, tool

    87 days ago

  • Circoletto: visualizing sequence similarity with Circos

    Circoletto, an online visualization tool based on Circos, which provides a fast, aesthetically pleasing and informative overview of sequence similarity search results. Online version and downloadable software package for offline use (source code in PERL) freely available at http://bat.ina.c...

    Tags: Circoletto, visualize, sequence, blast, similarity, Circos

    16 days ago