How to search for small peptide (hexapeptide) sequence ?
How to search for small peptide (hexapeptide) sequence which are modified by single D-amino acid replacement from parent peptide sequence? Which database or tool is available to find available sequence similarity?? The parent peptide sequence is a part of human protein with all six L-amino acid ...Tags: Hexapeptide, Sequence, Search, Peptide, Database, Tool, Find, Similarity
3177 days ago
Tags: Bioinformatics, Chromosome, Genome, NGS, Align, Compare, Similarity
2646 days ago
Tags: Bioinformatics, Chromosome, Genome, NGS, Align, Compare, Similarity, Scaffolding
2646 days ago
MOSS: A System for Detecting Software Similarity
Moss (for a Measure Of Software Similarity) is an automatic system for determining the similarity of programs. To date, the main application of Moss has been in detecting plagiarism in programming classes. Since its development in 1994, Moss has been very effective in this role. The algorithm beh...Tags: MOSS, System, Detecting, Software, Similarity, detect, plagiarism, programming
2292 days ago
PLAST: A fast, accurate and NGS scalable bank-to-bank sequence similarity search tool
PLAST is a fast, accurate and NGS scalable bank-to-bank sequence similarity search tool providing significant accelerations of seeds-based heuristic comparison methods, such as the Blast suite of algorithms. Relying on unique software architecture, PLAST takes full advantage of recent multi-core...Tags: PLAST, fast, accurate, NGS, scalable, bank-to-bank, sequence, similarity, search, tool
2300 days ago
Circoletto: visualizing sequence similarity with Circos
Circoletto, an online visualization tool based on Circos, which provides a fast, aesthetically pleasing and informative overview of sequence similarity search results. Online version and downloadable software package for offline use (source code in PERL) freely available at http://bat.ina.c...Tags: Circoletto, visualize, sequence, blast, similarity, Circos
2230 days ago
kWIP: The k-mer weighted inner product, a de novo estimator of genetic similarity
The k-mer Weighted Inner Product. This software implements a de novo, alignment free measure of sample genetic dissimilarity which operates upon raw sequencing reads. It is able to calculate the genetic dissimilarity between samples without any reference genome, and without assembling one. ...Tags: kWIP, k-mer, weighted, inner, product, de novo, estimator, genetic, similarity
2121 days ago
GMASS: a novel measure for genomeassembly structural similarity
The GMASS score is a novel measure for representing structural similarity between two assemblies. It will contribute to the understanding of assembly output and developing de novo assemblers. https://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-019-2710-zTags: GMASS, novel, measure, genome, assembly, structural, similarity
1800 days ago