Results for "Simple way"
Bio-Scripts
# To follow these instructions, we'll assume your system admins have already installed these essentials: # Debi...otest -l $PERL_BASE/perl-5.24.1 App::cpanminus JSON::Parse XML::Parser XML::Simple LWP LWP::Sim...2134 days ago
Retrieve NCBI GenBank records with a range of accession numbers
#!/usr/bin/perl #FILE: ncbi_search.pl #AUTH: Paul Stothard (paul.stothard@gmail.com) use warnings; use strict; use Getopt::Long; use LWP::Sim...2906 days ago
- #!/usr/bin/env perl use strict; use warnings; use LWP::Simple; use XML::XPath; use XML::XPath::XMLPar...DNA/text()'); # find all sequences # there should be only one node, anyway: foreach my $node ($node...
2900 days ago
Extract fasta sequence from a multifasta file with coordinates
#!/usr/bin/perl use Bio::DB::Fasta; #USAGE perl extractFASTAwithSIZE.pl finalSample_filtered.fa 0 1000 > aaaa...ew('/path/to/fasta/files/'); my @ids = $db->get_all_primary_ids; # Sim...2522 days ago
Create genome scaffolding with Perl
#!/usr/bin/perl use warnings; use strict; use English; use Pod::Usage; ## uses pod documentation in usage co..., CY => "C", TY => "T", AT => "W", AW => "A", TW => "T", ); # if "sim...2299 days ago
Installing Busco version 4.0.6
(base) jit@jit-HP-Pro-3335-MT: conda install -c bioconda -c conda-forge busco=4.0.6 Collecting package metadata (re...n-pp-4.04-pl526_0 perl-locale-maket~ bioconda/linux-64::perl-locale-maketext-sim...1443 days ago
Installing pb-assembly on Linux !
[jnarayan@hmem00 ~]$ module avail -------------------------------------------------------- /usr/share/Modules/mo...2.1 libGLU/9.0.0-foss-2016a XML-Sim...2025 days ago
- jit@jit-HP-Pro-3335-MT:~/Downloads/testDock$ sudo docker system df TYPE TOTAL ACTIVE...libstatistics-distributions-perl && apt-get install -y libterm-progressbar-sim...
1499 days ago
- (base) jit@jit-HP-Pro-3335-MT:~/Downloads/testDock$ docker build -t autocontampr . Sending build context to Docker daemon 9.024MB Step 1/16 : FROM ubuntu:14.04 -...
1432 days ago
- (JitMetaENV) ➜ day2 conda install -c bioconda kraken2 Collecting package metadata (current_repodata.json): done Solving environment: failed with initial frozen sol...
1206 days ago
