Results for "Simulation"
Bio-Scripts
Palindrome Simulation commands !
(base) ➜ palindromeAssemblySim more allCommands 3315 mutate.sh in= mutant15CH101.fasta out=mutant153CH101.fasta id=97 3316 mutate.sh in=mutant15CH101.fasta out=mu...1724 days ago
Create random 10000 SNPs in genome !
...ck specified options .. Running simuG for SNP/INDEL simulation >> Ignore all options for CNV/inversion/translocation simulation. This simulation use the r...0 > titv_ratio = 0.5 [Sun Jan 10 16:05:57 2021] Simulation completed! :) [Sun Jan 10...1199 days ago
Create random 1000 INDEL in genome !
...ck specified options .. Running simuG for SNP/INDEL simulation >> Ignore all options for CNV/inversion/translocation simulation. This simulation use the r...werlaw_constant = 0.5 [Sun Jan 10 16:14:00 2021] Simulation completed! :) [Sun Jan 10...1199 days ago
Create random 1000 CNVs in genome !
...1] Check specified options .. Running simuG for CNV simulation >> Ignore all options for inversion/translocation simulation. This simulation use the r...> cnv_max_size = 10000 [Sun Jan 10 16:24:20 2021] Simulation completed! :) [Sun Jan 10...1199 days ago
Create random 5 inversions in genome !
...Check specified options .. Running simuG for inversion simulation >> Ignore all options for translocation simulation. This simulation use the r...ersion_max_size = 100000 [Sun Jan 10 16:30:40 2021] Simulation completed! :) [Sun Jan 10...1199 days ago
Create random 2 translocations in genome !
...1] Check specified options .. Running simuG for translocation simulation >> This simulation use the random seed: 19251958...g the correspondance map for genomic variants introduced during simulation: simuTRANS.refseq2simseq.map...1199 days ago
Commandline for paired end reads simulation with BBMap !
(JitMetaENV) ➜ mixedSample git:(main) ✗ /home/urbe/Tools/bbmap/randomreads.sh ref=mixed.fa out=reads_BBMAP250.fq paired interleaved reads=100k length=250 mininsert=400 m...978 days ago
- $ sudo apt install art-nextgen-simulation-tools [sudo] password for nee...gested packages: art-nextgen-simulation-tools-profiles gsl-ref-psdoc...ll be installed: art-nextgen-simulation-tools libgsl23 libgslcblas0...ocal/universe amd64 art-nextgen-simulation-tools amd64 20160605+dfsg-4 [...
653 days ago
