Results for "Single"
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Comment on "Far Manager Commands and Links !"
...urable multilevel user menu F3, F4 File viewer and editor F5, F6 Rename or move. Use ShiftF5 or ShiftF6 to copy/rename single file/folder under cursor &nb...951 days ago
- ...ons. $ ./fastANI -h One to One. Compute ANI between single query and single reference genome: $ ./fa...ta or multi-fasta format. One to Many. Compute ANI between single query genome and multiple ref...
1091 days ago
Comment on "Installing BLAT on Linux !"
...ay to do this now for Unix users is via Git following the instructions at: http://genome.ucsc.edu/admin/git.html Or, fetch the entire source in a single file: rsync -azvP rsync://hg...1200 days ago
Comment on "Sibelia: A comparative genomics tool"
...in the graph are plotted and non-branching paths are collapsed into a single edge. Blue edges are generate...ge --noblocks -g -m 25 <input_file> Where "run.stage" contains single number "0". Fine tuning =...1275 days ago
Comment on "KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies"
...n plot the kmer content of the assembly compared to the kmer content of the read set. The first thing we need to do is to combine the reads into a single file, for gzipped files, this...1327 days ago
- kallisto can process either single-end or paired-end reads. The default runnin...2.fastq pairB_1.fastq pairB_2.fastq For single-end mode you supply the ..., e.g kallisto quant -i index -o output --single -l 200 -s 20 file1.fastq.gz f...
1351 days ago
Comment on "Want to Know which genome assembler rule the world ?"
Canu Assembler is my personal favourate.Canu is a fork of the Celera Assembler, designed for high-noise single-molecule sequencing (such as the PacBio RS II/Sequelor Oxford Nanopore MinION).1940 days ago
- ...sp;MultiQC- Aggregate and visualise results from numerous tools (FastQC, HTSeq, RSeQC, Tophat, STAR, others..) across all samples into a single report. NGSQC NGSQC: cr...
2127 days ago
Comment on "Run miniasm assembler on nanopore reads !"
...STQ files and you need to map your FASTQ file against itself. So, if you have multiple FASTQ sequencing files, you have to concatenate them into a single file prior to running minimap...2157 days ago
- ...ected | -nanopore-raw | -nanopore-corrected] *fastq By default, all three stages (correct, trim, assemble) are computed. To compute only a single stage, use: -correct...
2165 days ago
