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Results for "Single"

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  • Jit

    Pollux: platform independent error correction of single and mixed genomes

    Pollux: General-purpose error corrector that corrects errors introduced by Illumina, Ion Torrent, and Roche 454 sequencing technologies and can be applied to single- or mixed-genome data. In addition to correcting substitution errors, we locate and correct insertion, deletion, and homopolymer err...

    Tags: Pollux, Platform, Independent, Error, Correction, Single, Mixed, Genomes

    2527 days ago

  • Robert M Willioms

    Single Cell RNAseq data analysis tutorial !!

    A major breakthrough (replaced microarrays) in the late 00’s and has been widely used since Measures the average expression level for each gene across a large population of input cells Useful for comparative transcriptomics, e.g. samples of the same tissue from different ...

    Tags: Single, Cell, RNAseq, analysis, tutorial

    2335 days ago

  • Neelam Jha

    Multifasta to singleline fasta. $ awk '/^>/ {printf("\n%s\n",$0);next; } { printf("%s",$0);} END {printf("\n");}' < file.fa #Multi #Single #Fasta #Convert

    Tags: Multi, Single, Fasta, Convert

    2027 days ago

  • Rahul Agarwal

    https://www.cartana.se/ #Brain #Single #cell #sequencing

    Tags: Brain, Single, cell, sequencing

    1541 days ago

  • LEGE

    Multiline to singleline covert. $ awk '/^>/ {printf("%s%s\t",(N>0?"\n":""),$0);N++;next;} {printf("%s",$0);} END {printf("\n");}' < input.fa #Multi #Single #Convert #awk

    Tags: Multi, Single, Convert, awk

    1607 days ago

  • Rahul Agarwal

    https://panglaodb.se/index.html #Single #Cell #database

    Tags: Single, Cell, database

    1541 days ago

  • BioStar

    #Multi-line fasta to #Single-line Fasta $ awk '/^>/ {if (NR>1) print ""; printf("%s\n", $0); next; } { printf("%s", $0) } END { printf("\n"); }' multi_line.fasta > single_line.fasta

    Tags: Multi, Single

    80 days ago

  • Jit

    INC-Seq: accurate single molecule reads using nanopore sequencing

    INC-Seq reads enabled accurate species-level classification, identification of species at 0.1 % abundance and robust quantification of relative abundances, providing a cheap and effective approach for pathogen detection and microbiome profiling on the MinION system.

    Tags: INC-Seq, accurate, single, molecule, reads, nopore, sequencing

    2335 days ago

  • Jit

    Flye: Fast and accurate de novo assembler for single molecule sequencing reads

    Flye is a de novo assembler for long and noisy reads, such as those produced by PacBio and Oxford Nanopore Technologies. The algorithm uses an A-Bruijn graph to find the overlaps between reads and does not require them to be error-corrected. After the initial assembly, Flye performs an extra repe...

    Tags: Flye, de novo, assembler, ONT, Nanopore, PacBio, Assembly, single, molecule, sequencing, reads

    2177 days ago

  • Rahul Nayak

    CheckM:Assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

    CheckM provides a set of tools for assessing the quality of genomes recovered from isolates, single cells, or metagenomes. It provides robust estimates of genome completeness and contamination by using collocated sets of genes that are ubiquitous and single-copy within a phylogenetic lineage. Ass...

    Tags: CheckM, Assessing, quality, microbial, genomes, recovered, isolates, single, cells, metagenomes, Validation

    2159 days ago

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