2876 days ago
Needleman-Wunsch Algorithm in Perl
#!/usr/bin/perl # USAGE: perl nw.pl HEAGAWGHEE PAWHEAE BLOSUM50.txt -8 # See: "Biological sequence anaysis" Durbin et al. ed. CUP 1998, Pg. 19 # Needleman-Wu...2867 days ago
2834 days ago
2089 days ago
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2037 days ago
Installing pb-assembly on Linux !
[jnarayan@hmem00 ~]$ module avail ----------------------------------------------------...4.5.5 R/3.2.3-goolf-1.4.10 gromacs/single/4.5...1996 days ago
1988 days ago
Bash script to download SRA file !
#We can use the sratoolkit to directly pull the sequence data (in paired FASTQ form...p is in the SRA toolkit. It allows directly downloading data from a particular sequencing run ID fastq-dump --split-...1521 days ago
Perl script to delete the adjacent repeats !
/usr/bin/perl #Mostly the interview question for bioinfomatician ! #Write a code to d...s/(.)\1/$1/gi #And finally, if you wanted to trim any number of duplicates down to a single let...1512 days ago