UCSC Genome Browser and Blat software !
...running the binary with no arguments. The UCSC Genome Browser and Blat software are free for academic, nonpro...utoXmlFor information about commercial licensing of the Genome Browser software, see http://genome.ucsc.edu/l...2989 days ago
2982 days ago
Ensembl comparative genomics resources
...species and the focus on vertebrates makes Ensembl an ideal system to perform and support vertebrate comparative genomic analyses. We use robust software and pipelines to produce refe...2978 days ago
2977 days ago
RNA-Seq De novo Assembly Using Trinity
...esents a novel method for the efficient and robust de novo reconstruction of transcriptomes from RNA-seq data. Trinity combines three independent software modules: Inchworm, Chrysalis,...2955 days ago
PEAR: a fast and accurate Illumina Paired-End reAd mergeR
...t can merge millions of paired end reads within a couple of minutes on a standard desktop computer. More at http://www.exelixis-lab.org/web/software/pear Paper: http://www....2940 days ago
REAPR: a universal tool for genome assembly evaluation
...n assembly for manual inspection. It reports mis-assemblies and other warnings, and produces a new broken assembly based on the error calls. The software requires as input an assembly...2940 days ago
2929 days ago
HOMER: Software for motif discovery and next-gen sequencing analysis
This tutorial covers topics independently of HOMER, and represents knowledge which is important to know before diving head first into more advanced analysis tools such a...2921 days ago
CANU: Assembling Large Genomes with Single-Molecule Sequencing and Locality Sensitive Hashing.
...ork of the Celera Assembler designed for high-noise single-molecule sequencing (such as the PacBio RSII or Oxford Nanopore MinION). The software is currently alpha level, fee...2904 days ago