Results for "Stats"
Blogs
Computer simulation of genetic mechanism !!
...genome scans http://www.hapsample.org/ HAPGEN A simulator for the simulation of case control datasets at SNP markers https://mathgen.stats.ox.ac.uk/genetics_software/ha...2958 days ago
Tools and Method for Haplotype phasing !
...oft/gh/ The Genome Analysis Toolkit: http://www.broadinstitute.org/gsa/wiki/index.php/The_Genome_Analysis_Toolkit IMPUTE2: https://mathgen.stats.ox.ac.uk/impute/impute_v2.htm...1321 days ago
- +2 more Blogs
Bookmarks
- Some of the useful bioinformatics scripts. For example ... contig-stats.pl is a Perl script that will automatically describe features of a sequence assembly. http://milkweedgenome.org/?q=scripts
3343 days ago
- IMPUTE2 is a computer program for phasing observed genotypes and imputing missing genotypes. Most people use just a couple of the program's basic functions, but w...
2730 days ago
- +5 more Bookmarks
Pages
Awesome perl frameworks, libraries and software - PART 2
...Example Perl module for extending the cPanel API cosimo/perl5-net-statsd - Net::Statsd is a Perl client for Etsy's...fs snapshots, Web-Frontend, Statistics, History-Merger) NoodlesNZ/statsd-perl-mysql - MySQL stat...2477 days ago
Awesome perl frameworks, libraries and software - PART 3
...y-Bot - a RSS trawler and social media broadcaster PDLPorters/PDL-Stats - Statistics modules in...rials - Nginx Tutorials creaktive/rainbarf - CPU/RAM/battery stats chart bar for tmux (and GNU s...2477 days ago
- +1 more Pages
Top-level pages
List of generic simulation software/tools/resource with brief description and homepage !!!
...ate regions or genome scans http://www.hapsample.org/HAPGEN A simulator for the simulation of case control datasets at SNP markers https://mathgen.stats.ox.ac.uk/genetics_software/ha...3720 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...ically tailored to Oxford Nanopore Reads, written in Python; Package comes with 3 programs, marginAlign, marginCaller (calls SNVs), marginStats (computes qc stats on sam files) Input: SAM Ou...2892 days ago
- +3 more Top-level pages
Wire posts
Bio-Scripts
Calculate some statistics for a DNA alignment with Perl
...io::Align::DNAStatistics; my $stats = Bio::Align::DNAStatistics->...gnin->next_aln; my $jcmatrix = $stats->distance(-align => $aln,...lnobj->each_seq; my $results = $stats->calc_KaKs_pair($alnobj, $seq...t "\n\n"; } my $result3 = $stats->calc_average_KaKs($alnobj, 1...2632 days ago
- ...AOSW_8_2_C1CBGACXX.IND11_noribo_clean.fastq --pairs_together --PARALLEL_STATS Converting input files. (b...s/trinityrnaseq-Trinity-v2.6.6/util/..//Inchworm/bin/fastaToKmerCoverageStats --reads left.fa --kmers jelly...
2110 days ago
- +10 more Bio-Scripts
Tags
- Assembly Likelihood Evaluation (ALE) framework that overcomes these limitations, systematically evaluating the accuracy of an assembly in a reference-independent manner using rigorous statistical methods. This framework is comprehensive, and integrates read quality, mate pair orientation and inse...
Tags: Bioinformatics, FASTQ, NGS, ALE, Framework, Stats, Reads, Evaluation, Quality, Assembly
2914 days ago
- The Genome Assembly Evaluation Metrics and Reporting (GAEMR) package is an assembly analysis framework composed a number of integrated modules. These modules can be executed as a single program to generate a complete analysis report, or executed individually to generate s...
Tags: Bioinformatics, GAEMR, Assembly, Stats, Correctness, Accuracy, Software, Tool, NGS
2865 days ago
- +7 more Tags
Comments
Comment on "Run miniasm assembler on nanopore reads !"
...p.paf.gz > miniasm.gfa awk ’/^S/{print “>”$2”\n”$3}’ miniasm.gfa > miniasm.fasta assembly-stats ./miniasm.fasta dnadiff -p d...779 days ago
Comment on "R and Bioconductor Tutorial"
The illinois R tutorial http://math.illinoisstate.edu/dhkim/rstuff/rtutor.html The basic stats with R at http://ww2.coastal.edu/kingw/statistics/R-tutorials/3690 days ago
