Results for "Stats"
Blogs
Computer simulation of genetic mechanism !!
...genome scans http://www.hapsample.org/ HAPGEN A simulator for the simulation of case control datasets at SNP markers https://mathgen.stats.ox.ac.uk/genetics_software/ha...2959 days ago
Tools and Method for Haplotype phasing !
...oft/gh/ The Genome Analysis Toolkit: http://www.broadinstitute.org/gsa/wiki/index.php/The_Genome_Analysis_Toolkit IMPUTE2: https://mathgen.stats.ox.ac.uk/impute/impute_v2.htm...1322 days ago
- +2 more Blogs
Bookmarks
- Some of the useful bioinformatics scripts. For example ... contig-stats.pl is a Perl script that will automatically describe features of a sequence assembly. http://milkweedgenome.org/?q=scripts
3344 days ago
- IMPUTE2 is a computer program for phasing observed genotypes and imputing missing genotypes. Most people use just a couple of the program's basic functions, but w...
2731 days ago
- +5 more Bookmarks
Pages
Awesome perl frameworks, libraries and software - PART 2
...Example Perl module for extending the cPanel API cosimo/perl5-net-statsd - Net::Statsd is a Perl client for Etsy's...fs snapshots, Web-Frontend, Statistics, History-Merger) NoodlesNZ/statsd-perl-mysql - MySQL stat...2478 days ago
Awesome perl frameworks, libraries and software - PART 3
...y-Bot - a RSS trawler and social media broadcaster PDLPorters/PDL-Stats - Statistics modules in...rials - Nginx Tutorials creaktive/rainbarf - CPU/RAM/battery stats chart bar for tmux (and GNU s...2478 days ago
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Top-level pages
List of generic simulation software/tools/resource with brief description and homepage !!!
...ate regions or genome scans http://www.hapsample.org/HAPGEN A simulator for the simulation of case control datasets at SNP markers https://mathgen.stats.ox.ac.uk/genetics_software/ha...3721 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...ically tailored to Oxford Nanopore Reads, written in Python; Package comes with 3 programs, marginAlign, marginCaller (calls SNVs), marginStats (computes qc stats on sam files) Input: SAM Ou...2893 days ago
- +3 more Top-level pages
Wire posts
Bio-Scripts
Calculate some statistics for a DNA alignment with Perl
...io::Align::DNAStatistics; my $stats = Bio::Align::DNAStatistics->...gnin->next_aln; my $jcmatrix = $stats->distance(-align => $aln,...lnobj->each_seq; my $results = $stats->calc_KaKs_pair($alnobj, $seq...t "\n\n"; } my $result3 = $stats->calc_average_KaKs($alnobj, 1...2633 days ago
- ...AOSW_8_2_C1CBGACXX.IND11_noribo_clean.fastq --pairs_together --PARALLEL_STATS Converting input files. (b...s/trinityrnaseq-Trinity-v2.6.6/util/..//Inchworm/bin/fastaToKmerCoverageStats --reads left.fa --kmers jelly...
2111 days ago
- +10 more Bio-Scripts
Tags
- The pacman package is an R package management tool that combines the functionality of base library related functions into intuitively named functions. This package is ideally added to .Rprofile to increase workflow by reducing time recalling obscurely named functions, reducing code and integratin...
Tags: Bioinformatics, Computational Biology, R, Stats, Package, Pacman
3350 days ago
Comments
Comment on "Run miniasm assembler on nanopore reads !"
...p.paf.gz > miniasm.gfa awk ’/^S/{print “>”$2”\n”$3}’ miniasm.gfa > miniasm.fasta assembly-stats ./miniasm.fasta dnadiff -p d...780 days ago
Comment on "R and Bioconductor Tutorial"
The illinois R tutorial http://math.illinoisstate.edu/dhkim/rstuff/rtutor.html The basic stats with R at http://ww2.coastal.edu/kingw/statistics/R-tutorials/3691 days ago
