Results for "Stats"

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  • Useful R resources @ http://www.stat.wisc.edu/network-skills/learnR #R #Stats #Learn #Tutorial #Material #Learn #Course

    Tags: R, Stats, Learn, Tutorial, Material, Learn, Course

    1269 days ago

  • Pacman

    The pacman package is an R package management tool that combines the functionality of base library related functions into intuitively named functions. This package is ideally added to .Rprofile to increase workflow by reducing time recalling obscurely named functions, reducing code and integratin...

    Tags: Bioinformatics, Computational Biology, R, Stats, Package, Pacman

    1008 days ago

  • ALE: a Generic Assembly Likelihood Evaluation Framework for Assessing the Accuracy of Genome and Metagenome Assemblies

    Assembly Likelihood Evaluation (ALE) framework that overcomes these limitations, systematically evaluating the accuracy of an assembly in a reference-independent manner using rigorous statistical methods. This framework is comprehensive, and integrates read quality, mate pair orientation and inse...

    Tags: Bioinformatics, FASTQ, NGS, ALE, Framework, Stats, Reads, Evaluation, Quality, Assembly

    574 days ago

  • GAEMR

    The Genome Assembly Evaluation Metrics and Reporting (GAEMR) package is an assembly analysis framework composed a number of integrated modules. These modules can be executed as a single program to generate a complete analysis report, or executed individually to generate s...

    Tags: Bioinformatics, GAEMR, Assembly, Stats, Correctness, Accuracy, Software, Tool, NGS

    525 days ago

  • Genome basic stats http://www.cbs.dtu.dk/courses/genomics_course/Day3.pdf #Genome #Stats #Plot #R

    Tags: Genome, Stats, Plot, R

    454 days ago

  • TGNet

    Recent technological progress has greatly facilitated de novo genome sequencing. However, de novo assemblies consist in many pieces of contiguous sequence (contigs) arranged in thousands of scaffolds instead of small numbers of chromosomes. Confirming and improving the quality...

    Tags: Bioinformatics, Analysis, NGS, Stats, Assemble, Plot, TGNet, Visualize, Genome

    454 days ago

  • GenomeScope !!

    Summary: GenomeScope is an open-source web tool to rapidly estimate the overall characteristics of a genome, including genome size, heterozygosity rate, and repeat content from unprocessed short reads. These features are essential for studying genome evolution, and help to choose para...

    Tags: Bioinformatics, Analysis, NGS, GenomeScope, Genome, Stats, Estimate, Heterozygosity, repeat content, Statistical

    396 days ago

  • Statistics Using R with Biological Examples

    This book is a manifestation of my desire to teach researchers in biology a bit more about statistics than an ordinary introductory course covers and to introduce the utilization of R as a tool for analyzing their data. My goal is to reach those with little or no training in higher level statisti...

    Tags: Bioinformatics, R, Stats, Biology, Book, BioConductor, NGS

    173 days ago

  • Statistical for biological research

    There is no disputing the importance of statistical analysis in biological research, but too often it is considered only after an experiment is completed, when it may be too late. This collection highlights important statistical issues that biologists should be aware of and provides practical ad...

    Tags: Bioinformatics, Stats, Biology, Book, Links

    383 days ago

  • ART: Set of Simulation Tools

    ART is a set of simulation tools to generate synthetic next-generation sequencing reads. ART simulates sequencing reads by mimicking real sequencing process with empirical error models or quality profiles summarized from large recalibrated sequencing data. ART can also simulate reads using user o...

    Tags: Bioinformatics, Stats, Reads, NGS, Simulator

    383 days ago