Results for "String"
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Well designed regular expression cheat sheet
In our computational biology work, we mostly play with DNA or AA string. For string based programming work this regular expression cheat sheet is really helpful. Keep it handy.3932 days ago
Bioinformatics Algorithm Demonstrations and Tutorials
...that is easily comprehensible to users with little programming experience. The algorithms demonstrated include two approaches to approximate string matching (dynamic programming...3687 days ago
- ...ds.Fermi follows the overlap-layout-consensus paradigm and uses the FM-DNA-index (FMD-index) as the key data structure. It is inspired by the string graph assembler (Simpson...
2778 days ago
- SGA is a de novo genome assembler based on the concept of string graphs. The major goal of SGA is to be very memory efficient, which is achieved by using a compressed representation o...
2688 days ago
FMLRC: a long-read error correction tool using the multi-string Burrows Wheeler Transform
FMLRC, or FM-index Long Read Corrector, is a tool for performing hybrid correction of long read sequencing using the BWT and FM-index of short-read sequencing data. Giv...2077 days ago
SvABA: Genome-wide detection of structural variants and indels by local assembly
...ting structural variants in sequencing data using genome-wide local assembly. Under the hood, SvABA uses a custom implementation of SGA (String Graph Assembler) by Jared Sim...1913 days ago
NextDenovo: string graph-based de novo assembler for TGS long reads
NextDenovo is a string graph-based de novo assembler for TGS long reads. It uses a "cor...roximately 15% sequencing errors, and NextGraph can be used to construct a string graph with corrected reads. I...1565 days ago
Rcorrector: efficient and accurate error correction for Illumina RNA-seq reads
...-i seq_files_interleaved: comma sperated files for interleaved paired-end data sets Optional -k INT: kmer_length (<=32, default: 23) -od STRING: output_file_directory (defau...1534 days ago
SvABA: Structural variation and indel detection by local assembly
...ting structural variants in sequencing data using genome-wide local assembly. Under the hood, SvABA uses a custom implementation of SGA (String Graph Assembler) by Jared Sim...1500 days ago
ShinyGO v0.61: Gene Ontology Enrichment Analysis + more
...tabase updated to Ensembl 96. New bacterial and fungal genomes based on STRING-db! Just paste your gene list...onal 2031 genomes (including bacteria and fungi) are annotated based on STRING-db (v.10). In addition, it al...1415 days ago
