Results for "String"
Top-level pages
Best book Titles for Learning Bionformatics
..., Dennis Elliott Shasha (Editors), 1999, Oxford Univ Press Time Warps, String Edits, and Macromolecules: Th...logy, Joao Meidanis, Joao C. Setabal, 1997, PWS Pub. Co. Algorithms on Strings, Trees, and Sequences: Compu...3902 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...& Durbin, Genome Research 22:549-556, 2012 Full Text [Describes the String Graph Assembler (SGA), which...ndex of the 1.2 billion reads] Readjoiner: a fast and memory efficient string graph-based sequence assemble...3764 days ago
Perl one-liner for bioinformatician !!!
...a 20 nucleotide long random residue.perl -le 'print "a"x50'#generate a string of ‘x’ 50 charact...map { ord } split //, "hello world"'#Will print the ascii value of the string hello world.perl -le '@ascii...3613 days ago
Next generation sequencing in R or bioconductor environment
...some of them are as follows Biostrings The Biostrings package from Bioconductor pr...many speed and memory effective string containers, string matching a...cture for interacting with a Biostring based genome sequence. BSgeno...erages the biomaRt, IRanges, Biostrings, BSgenome, GO.db, multtest a...3609 days ago
Commercial and public next-gen-seq (NGS) software
...s SOLiD data. SOCS is built on an iterative variation of the Rabin-Karp string search algorithm, which uses...nterface, and improved space and time requirements. Essentially a large string matching toolbox. POSIX. Zoom...3504 days ago
Software packages for next gen sequence analysis
...s SOLiD data. SOCS is built on an iterative variation of the Rabin-Karp string search algorithm, which uses...nterface, and improved space and time requirements. Essentially a large string matching toolbox. POSIX. * Zo...3227 days ago
- ...mat for storing SAM data. BCF Format: Binary call format. Binary, compressed format for storing VCF data. CIGAR String: Compact Idiosyncratic Gapped Alignment Report. A compact string that (partially) summarizes t...
2854 days ago
Genome Assembly Tools and Software - PART1 !!
...predominantly classified into two categories: string-based model and graph-based m...l Assembler The StriDe Assembler integrates string and de Bruijn graph by decomp...e the information from short sequence reads by stringently assembling them into con...2670 days ago
Source Code and Pseudo Code !!
...character on the line) set can't-be-ascending-flag to 0 set consec cntr to 1 set ascending cntr to 1 putchar first char of string to screen set read char...2644 days ago
Perl Special Vars Quick Reference
...alty. Requires /p modifier. $` Prematch for last successful match string (degrades performance)....res /p modifier. $' Postmatch for last successful match string (degrades performance)....2629 days ago
