Results for "Structure"


  • PolyPhen-2: Prediction of functional effects of human nsSNPs

    PolyPhen-2 (Polymorphism Phenotyping v2) is a tool which predicts possible impact of an amino acid substitution on the structure and function of a human protein using straightforward physical and comparative considerations.

    396 days ago

  • ShRec3D

    ShRec3D is a program that aims at reconstructing a genome 3D structure (b) from the sole knowledge of the contacts between different genomic regions (a) as determined by Hi-C (http://w...

    910 days ago

  • HivePlot

    ...r visualization of large networks — a method that is both general and tunable and useful as a starting point in visually exploring network structure. More at

    126 days ago

  • A Brief Bioinformatics Tutorial of your choice to find homologues, how to perform a multiple alignment of the homologues you've selected and how to edit this alignment. The Structure part is about molecular visua...

    1128 days ago

  • Entrez Direct: E-utilities on the UNIX Command Line

    ...the NCBI's suite of interconnected databases (publication, sequence, structure, gene, variation, expression,...of data from document summaries or other results that are returned in structured XML format. This can elimina...

    247 days ago

  • Genome STRiP

    Genome STRiP (Genome STRucture In Populations) is a suite of tools for discovering and genotyping structural variations using sequencing data. The methods are designed to detect...

    290 days ago

  • Painless package development for R

    Devtools makes package development a breeze: it works with R’s existing conventions for code structure, adding efficient tools to support the cycle of package development. With d...

    416 days ago


    ...all the information in raw reads.Fermi follows the overlap-layout-consensus paradigm and uses the FM-DNA-index (FMD-index) as the key data structure. It is inspired by the string...

    287 days ago

  • ART: Set of Simulation Tools

    ...test or benchmark a variety of method or tools for next-generation sequencing data analysis, including read alignment, de novo assembly, SNP and structure variation discovery. ART was...

    232 days ago

  • HybPiper directory. You will end up with one directory per run of HybPiper, and some of the later scripts take advantage of this predictable directory structure.

    231 days ago