Results for "Structure"


  • PolyPhen-2: Prediction of functional effects of human nsSNPs

    PolyPhen-2 (Polymorphism Phenotyping v2) is a tool which predicts possible impact of an amino acid substitution on the structure and function of a human protein using straightforward physical and comparative considerations.

    427 days ago

  • ShRec3D

    ShRec3D is a program that aims at reconstructing a genome 3D structure (b) from the sole knowledge of the contacts between different genomic regions (a) as determined by Hi-C (http://w...

    942 days ago

  • HivePlot

    ...r visualization of large networks — a method that is both general and tunable and useful as a starting point in visually exploring network structure. More at

    158 days ago

  • eQuant : energy-based quality assessment of protein

    Protein structures are of varying quality. Especially, in-silico modeled structures are prone to contain serious...ness and reliability of these particular protein structures.eQuant is a service for stru...

    30 days ago

  • A Brief Bioinformatics Tutorial of your choice to find homologues, how to perform a multiple alignment of the homologues you've selected and how to edit this alignment. The Structure part is about molecular visua...

    1160 days ago

  • Entrez Direct: E-utilities on the UNIX Command Line

    ...the NCBI's suite of interconnected databases (publication, sequence, structure, gene, variation, expression,...of data from document summaries or other results that are returned in structured XML format. This can elimina...

    278 days ago

  • Genome STRiP

    Genome STRiP (Genome STRucture In Populations) is a suite of tools for discovering and genotyping structural variations using sequencing data. The methods are designed to detect...

    321 days ago

  • Painless package development for R

    Devtools makes package development a breeze: it works with R’s existing conventions for code structure, adding efficient tools to support the cycle of package development. With d...

    447 days ago


    ...all the information in raw reads.Fermi follows the overlap-layout-consensus paradigm and uses the FM-DNA-index (FMD-index) as the key data structure. It is inspired by the string...

    318 days ago

  • ART: Set of Simulation Tools

    ...test or benchmark a variety of method or tools for next-generation sequencing data analysis, including read alignment, de novo assembly, SNP and structure variation discovery. ART was...

    263 days ago