Results for "Structure Variation"


  • PGAP-X: Extension on pan-genome analysis pipeline

    ...ave been developed and integrated to analyze and visualize genomics structure variation, gene distribution with different conservative levels, and genetic variation from pan-genome sight. At the...

    29 days ago

  • Genome STRiP

    Genome STRiP (Genome STRucture In Populations) is a suite of to...vering and genotyping structural variations using sequencing data. The m...ds are designed to detect shared variation using data from multiple indi...terogeneous data sets, including variations in sequencing depth, read le...

    534 days ago

  • JPred4: A Protein Secondary Structure Prediction Server

    JPred4 ( is the latest version of the popular JPred protein secondary structure prediction server which provides predictions by the JNet algorithm, one of the most accurate methods for secondary structure prediction.

    54 days ago

  • Entrez Direct: E-utilities on the UNIX Command Line

    ...NCBI's suite of interconnected databases (publication, sequence, structure, gene, variation, expression, etc.) from a UNI...ata from document summaries or other results that are returned in structured XML format. This can elimina...

    491 days ago

  • Resolving the complexity of the human genome using single-molecule sequencing

    The human genome is arguably the most complete mammalian re...romatic gaps remain and aspects of its structural variation remain poorly understood ten...ter complexity of the human genome in the form of variation of longer and more complex re...

    956 days ago

  • PASA: Gene Structure Annotation and Analysis

    ...of expressed transcript sequences to automatically model gene structures, and to maintain gene structure annotation consistent with th...quence data. PASA also identifies and classifies all splicing variations supported by the transcript...

    57 days ago

  • Delta: a new Web-based 3D genome visualization and analysis platform

    Delta is an integrative visualization and analysis platform to facilitate visually a...model which represents the plausible consensus 3D structure of the genome. Deltafeat...ances the integration of genome topology/physical structure...

    63 days ago

  • ART: Set of Simulation Tools

    ...or benchmark a variety of method or tools for next-generation sequencing data analysis, including read alignment, de novo assembly, SNP and structure variation discovery. ART was used as a...

    476 days ago

  • Stampy

    Stampy is a package for the mapping of short reads from illumina sequencing machin...p-seq. Stampy excels in the mapping of reads containing that contain sequence variation relative to the reference, in...

    642 days ago

  • HistoneDB 2.0 – with variants

    This histone database can be used to explore the diversity of histone proteins and thei...any organisms. The resource was established to better understand how sequence variation may affect functional and str...

    629 days ago