Results for "Structure Variation"
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Nemo – A stochastic, individual-base, genetically explicit simulation platform
A recombination map has been added for all multi-locus traits. The map po...opic loci with several bi- or multi-allelic models. Spatial and temporal variation of selection on quantita...2761 days ago
Entrez Direct: E-utilities on the UNIX Command Line
...NCBI's suite of interconnected databases (publication, sequence, structure, gene, variation, expression, etc.) from a UNI...ata from document summaries or other results that are returned in structured XML format. This can elimina...2743 days ago
- ...or benchmark a variety of method or tools for next-generation sequencing data analysis, including read alignment, de novo assembly, SNP and structure variation discovery. ART was used as a...
2728 days ago
- HybPiper was designed for targeted sequence capture, in which DNA sequencing libraries are enriched for gene regions...r, and some of the later scripts take advantage of this predictable directory structure...
2728 days ago
- ...e Genome Biology Group at the Broad Institute. It provides basic data structures for efficient data manipulation (mostly genomic sequences, alignments, variation etc.), as well as specialized...
2704 days ago
- v0.0 by Glenn Hickey (hickey@soe.ucsc.edu) Progressive Cactus is a whole-genome alignment package. Requirements...In order to run the included tools (ex hal2maf) in the submodules/ directory structure...
2654 days ago
GenomeRing: alignment visualization based on SuperGenome coordinates
The number of completely sequenced genomes is continuously...ing, allowing for comparative analyses of genomic variation. Such analyses are often base...rehensive interpretation of all important genomic variations together with various supple...2652 days ago
fineSTRUCTURE v2 & GLOBETROTTER
Software available at this site FineSTRUCTURE version 2, a pipeline for running ChromoPainter and FineSTRUCTURE for population inference. A GUI is a...wnload from the Downloads page. FineSTRUCTURE R scripts, a facility for exp...terpret the results of ADMIXTURE and STRUCTURE...2626 days ago
- The hive plot is a rational visualization method for drawing networks. Nodes are mapped to and positioned o...eral and tunable and useful as a starting point in visually exploring network structure...
2623 days ago
- BRIG is a free cross-platform (Windows/Mac/Unix) application that can display circular...nes as input, BRIG can display gene presence, absence, truncation or sequence variation in a set of complete genomes,...
2623 days ago
