PBSuite: Software for Long-Read Sequencing Data from PacBio
PBJelly - the genome upgrading tool. PBHoney - the structural variation discovery tool Both are contained within the PBSuite code found in downloads.----- PBJelly -----Read The Paper http:...2613 days ago
2531 days ago
eQuant : energy-based quality assessment of protein
Protein structures are of varying quality. Especially, in-silico modeled structures are prone to contain serious errors, which limit the usefulness and reliability of these particular protein structure...2496 days ago
Genomicus: genome browser that enables users to navigate in genomes in several dimensions
Genomicus is a genome browser that enables users to navigate in genomes in several dimensions: linearly along chromos...nomes. Moreover, Genomicus stores and displays the predicted ancestral genome structure...2349 days ago
CHSMiner: a GUI tool to identify chromosomal homologous segments
Background The identification of chromosomal homologous segments (CHS) within and between genomes is essential for...l be useful for both experimentalists and bioinformaticians interested in the structure...2349 days ago
Ribbon: Visualizing complex genome alignments and structural variation:
Ribbon can be used for long reads, short reads, paired-end reads, and assembly/genome alignments. Instructions for each data format are available by clicking on "instruc...2338 days ago
phyloXML: XML for evolutionary biology and comparative genomics
phyloXML (example) is an XML language designed to describe phylogenetic trees (or networks) and associ...loXML, extensibility as well as domain specific applications are ensured. The structure...2338 days ago
Delta: a new Web-based 3D genome visualization and analysis platform
Delta is an integrative visualization and analysis platform to facilitate visually a...model which represents the plausible consensus 3D structure of the genome. Deltafeat...ances the integration of genome topology/physical structure...2317 days ago
PASA: Gene Structure Annotation and Analysis
...of expressed transcript sequences to automatically model gene structures, and to maintain gene structure annotation consistent with th...quence data. PASA also identifies and classifies all splicing variations supported by the transcript...2311 days ago
JPred4: A Protein Secondary Structure Prediction Server
JPred4 (http://www.compbio.dundee.ac.uk/jpred4) is the latest version of the popular JPred protein secondary structure prediction server which provides predictions by the JNet algorithm, one of the most accurate methods for secondary structure prediction.2308 days ago