Results for "Structure Variation"



  • Genome STRiP

    Genome STRiP (Genome STRucture In Populations) is a suite of to...vering and genotyping structural variations using sequencing data. The m...ds are designed to detect shared variation using data from multiple indi...terogeneous data sets, including variations in sequencing depth, read le...

    443 days ago

  • Entrez Direct: E-utilities on the UNIX Command Line

    ...NCBI's suite of interconnected databases (publication, sequence, structure, gene, variation, expression, etc.) from a UNI...ata from document summaries or other results that are returned in structured XML format. This can elimina...

    400 days ago

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Top-level pages

Wire posts

  • Interesting plotting #Plot #Structure #Variation #Cotton

    339 days ago

  • 3D-Jury: a simple approach to improve protein structure predictions #Protein #Predict #Structure

    9 days ago

  • +12 more Wire posts


Opportunity posts

ResearchLabs posts

  • Narcis Fernandez-Fuentes Lab

    ...Bioinformatics. We have a long-standing interest in protein structure prediction and structure-to-function relationships. interactions, peptide design, modeling of genetic variation, structure-based protein design and diff...

    913 days ago

  • Molecular Bioinformatics Lab (MBL)

    The main subject of interest in our laboratory is the study of the relationship among sequence, structure, and function in proteins and nucleic...r topics: the study of the sequence-structure relationship (application -&...iguration (sequence) and conformation (structure...

    1465 days ago

  • +26 more ResearchLabs posts




  • Read a tab delimited file and search with perl

    use strict; use warnings; use Data::Dumper; use Text::CSV; use IO::Handle; my $file = "/home/urbe/Tools/Alienomics_v0.1/Alienomics/output/intermediate_files/rRNA/refGene.megablast"; open my $fh, "[0]\n"; warn Dumper $row; # To see the structure }

    170 days ago



  • BioInformatics National Certification (BINC)

    BioInformatics National Certification (BINC)

    BINC (BioInformatics National Certification) is an initiative of Department of Biotechn...n imparting courses in Bioinformatics in India. However, there exists a large variation in the course contents, train...

    1568 days ago


  • The Mills lab

    The laboratory is focused on the discovery and analysis of structural variation (SVs) from genomic sequence data. As part of the 1000 Genomes Project and other endeavors, we have helped produce initial fine-scale maps using a variety of SV discovery approaches including: (i) paired-end mapping (o...

    Tags: Bioinformatics, Gene, Epigenomics, Structure Variation, Deletion, Breakpoint, Chromosome

    638 days ago


    PRISM is a software for split read (reads which span across a structrual variant -- SV ) mapping and SV calling from the mapping result. PRISM is able to detect small insertions and abitrary size deletions, inversions and tandom duplications with the direction of discordant read pairs. PRISM_CTX ...

    Tags: Bioinformatics, Comparative genomics, Genomics, Structure Variation, SV, NGS

    348 days ago

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