Results for "Structure Variation"

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  • Genome STRiP

    Genome STRiP (Genome STRucture In Populations) is a suite of to...vering and genotyping structural variations using sequencing data. The m...ds are designed to detect shared variation using data from multiple indi...terogeneous data sets, including variations in sequencing depth, read le...

    380 days ago

  • Entrez Direct: E-utilities on the UNIX Command Line

    ...NCBI's suite of interconnected databases (publication, sequence, structure, gene, variation, expression, etc.) from a UNI...ata from document summaries or other results that are returned in structured XML format. This can elimina...

    336 days ago

  • +33 more Bookmarks

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  • Interesting plotting https://genomebiology.biomedcentral.com/articles/10.1186/s13059-015-0678-1 #Plot #Structure #Variation #Cotton

    275 days ago

  • Data structure with R http://staff.washington.edu/jon/dsa-perl/dsa-perl.html #R #Data #Structure #Script #Perl

    154 days ago

  • +11 more Wire posts

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  • Narcis Fernandez-Fuentes Lab

    ...Bioinformatics. We have a long-standing interest in protein structure prediction and structure-to-function relationships. We...in-protein interactions, peptide design, modeling of genetic variation, structure-based protein design and diff...

    849 days ago

  • Molecular Bioinformatics Lab (MBL)

    The main subject of interest in our laboratory is the study of the relationship among sequence, structure, and function in proteins and nucleic...r topics: the study of the sequence-structure relationship (application -&...iguration (sequence) and conformation (structure...

    1401 days ago

  • +26 more ResearchLabs posts

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  • Read a tab delimited file and search with perl

    use strict; use warnings; use Data::Dumper; use Text::CSV; use IO::Handle; my $file = "/home/urbe/Tools/Alienomics_v0.1/Alienomics/output/intermediate_files/rRNA/refGene.megablast"; open my $fh, "[0]\n"; warn Dumper $row; # To see the structure }

    106 days ago

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  • BioInformatics National Certification (BINC)

    BioInformatics National Certification (BINC)

    BINC (BioInformatics National Certification) is an initiative of Department of Biotechn...n imparting courses in Bioinformatics in India. However, there exists a large variation in the course contents, train...

    1504 days ago

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  • The Mills lab

    The laboratory is focused on the discovery and analysis of structural variation (SVs) from genomic sequence data. As part of the 1000 Genomes Project and other endeavors, we have helped produce initial fine-scale maps using a variety of SV discovery approaches including: (i) paired-end mapping (o...

    Tags: Bioinformatics, Gene, Epigenomics, Structure Variation, Deletion, Breakpoint, Chromosome

    574 days ago

  • PRISM

    PRISM is a software for split read (reads which span across a structrual variant -- SV ) mapping and SV calling from the mapping result. PRISM is able to detect small insertions and abitrary size deletions, inversions and tandom duplications with the direction of discordant read pairs. PRISM_CTX ...

    Tags: Bioinformatics, Comparative genomics, Genomics, Structure Variation, SV, NGS

    284 days ago

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