Results for "Structure Variation"
Blogs
List of gene ontology software and tools
The Gene Ontology (GO) is a set of associations from biological phrases to specific genes...es often misses fundamental distinctions about GO structures, GO annotations, and what ca...dered lists of genes, visual browsing of GO graph structure...3693 days ago
Dynamic chromosome breakpoints !!!
Cell division involves the distribution of identical genetic material, DNA, to two daug...somes have some evolutionary importance and considered as a driver of genetic variation. Moreover, the chromosome bre...3536 days ago
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Bookmarks
Next Generation Sequencing (NGS) Tutorials
Institute of computational biomedicine, Cornell University...sis pipelines Detecting and annotating genetic variations using the HugeSeq pipeline&n...p; 10.1186/1471-2164-12-285 A framework for variation discovery and genotyping usin...3471 days ago
A Brief Bioinformatics Tutorial
This is about how to use a computer to find what is known about a gene of interest and also how to get new insights a...gnment of the homologues you've selected and how to edit this alignment. The Structure...3620 days ago
- +91 more Bookmarks
Files
Master Thesis: Trans-membrane topology prediction through Markov based decoders
Abstract: Background/Motivation: The dearth of structural information on alpha helical membrane protein (MPs) has...ials that can be used for automatic prediction of trans-membrane (TM) protein structure...3928 days ago
- Protein is a part of every cell in your body, and no other nutrient plays as many different roles in keeping you aliv...mentary movie. This documentary has been developed that emphasize on chemical structure...
3537 days ago
Pages
Bio++ : C Language libraries for your biological need
C has always been a language that never attempts to tie a programmer down - it allows for easy implementation, it com...ty test (Bowker's test).etc. Phylogenetics and molecular evolution Data structure...3931 days ago
- I found several useful bioinformatics articles which exaplain, define and elaborate ...ferent subfields, currently Glycoscience, Protein Structure. LASSAP a LArge Scale Sequen...iences A Practical Guide to protein sequence and structure...
3905 days ago
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Top-level pages
- "Bioinformatics is a science of biological predictions and analysis"...protein domains, and protein structures; and (3) the development and...s and three–dimensional structures of proteins) launched bioinf...tion of a protein. Protein 3D structures are stored in specific datab...
3931 days ago
Phylogenetic for Bioinformatics
Biologists estimate that there are about 5 to 100 million species of organisms living on...have a high degree of agreement in the molecular structure of these substances, while th...possible to isolate and identify these molecular structure...3930 days ago
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Wire posts
News
Chromatin: From nucleosomes to chromosomes, 30 April - 2 May 2014
EMBL-EBI announced the Wellcome Trust Scientific Conference Chromatin: From nucleosomes t...he latest developments in understanding chromatin structure and function, particularly ge...e leading researchers in chromatin and chromosome structure...3909 days ago
- ...ations; Qualitative MO Theory; Potential energy surfaces; Variational Theorem, Perturbation theor...Data; Correlation between Many Sets of Data; Quantitative Structure–Activity Relationships (QSAR); Structure property correlation; Molecul...
3813 days ago
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Opportunity posts
Structural polymorphism analysis from NGS data
The LabEx BASC (Biodiversity, Agroecosystems, Society, Climate), a network of 13...agroecosystems it will be critical to establish a link between sequence variation, functional variation, gene/protein expression and...3932 days ago
- van Noort Group is looking for PhD fellows We currently access an unprecedented know...aits: ethanol and high temperature tolerance. For both organisms both natural variation and the outcomes of experimen...
3932 days ago
- +42 more Opportunity posts
ResearchLabs posts
- The human genome project and similar projects in disease-causing organisms such as Plas...f Next Generation sequence data in cancer Methods for analysis of structural variation in cancer genomes Next Gener...
3931 days ago
- Our research aims to better understand how living systems respond to chemical agents. A...w the response to chemical exposure is modulated by genetic and physiological variation among individuals and how thi...
3931 days ago
- +31 more ResearchLabs posts
Fun
Bioinformatician become producer/director !!!
If a Bioinformatician starts producing Hindi Bollywood movies, names will be like this.... BLAST : Eak khoj Munna...Proteomics Koi Khel Nahi Jish Desh Mein Day Hoff Rehta Hai PDB Ek Numbari Structure...3902 days ago
Video
The Story of You: ENCODE and the human genome
Ever since a monk called Mendel started breeding pea plants we've been learning about our genomes. In 1953, Watson, Crick and Franklin described the structure...3890 days ago
'What is Life? A 21st Century Perspective' by Dr Craig Venter
One of the landmark events of 20th century science was celebrated and reinterpreted for t...he Irish event that inspired the discovery of the structure of DNA. In February, 1943 o...ditary information could be encoded in a chemical structure...3888 days ago
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Bio-Scripts
Read a tab delimited file and search with perl
use strict; use warnings; use Data::Dumper; use Text::CSV; use IO::Handle; my $file = "/home/urbe/Tools/Alienomics_v0.1/Alienomics/output/intermediate_files/rRNA/refGene.megablast"; open my $fh, "[0]\n"; warn Dumper $row; # To see the structure }2509 days ago
Plot the clock using Lastz -gerenal outfile
use strict; use warnings; use Statistics::R ; use List::Util qw(sum); #Usage perl clockPlot.pl Palindrome.palfc 1500 my $R = Statistics::R->new() ; $R->startR ;...2282 days ago
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Tryst
Tryst with a Bioinformatician # Dr Altan Kara
Dr Altan Kara is a Bioinformatics specialist at the faculty of Gene Engineering a...ed within the scope of the project. The molecular structures involved in the development...elop another pipeline for prokaryotic TCS protein structure...2346 days ago
Groups
BioInformatics National Certification (BINC)
BINC (BioInformatics National Certification) is an initiative of Department of Biotechn...n imparting courses in Bioinformatics in India. However, there exists a large variation in the course contents, train...3906 days ago
Tags
- The laboratory is focused on the discovery and analysis of structural variation (SVs) from genomic sequence data. As part of the 1000 Genomes Project and other endeavors, we have helped produce initial fine-scale maps using a variety of SV discovery approaches including: (i) paired-end mapping (o...
Tags: Bioinformatics, Gene, Epigenomics, Structure Variation, Deletion, Breakpoint, Chromosome
2976 days ago
- PRISM is a software for split read (reads which span across a structrual variant -- SV ) mapping and SV calling from the mapping result. PRISM is able to detect small insertions and abitrary size deletions, inversions and tandom duplications with the direction of discordant read pairs. PRISM_CTX ...
Tags: Bioinformatics, Comparative genomics, Genomics, Structure Variation, SV, NGS
2686 days ago
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Comments
- ...trand specificity), coverage (like mean coverage, mean coefficient of variation, 5’/3’ coverage,...depth, strand specificity, GC bias, read distribution over the genome structure and coverage uniformity. The...
2121 days ago
Comment on "Structural variation: the hidden genomic treasure"
PhD thesis and useful material on Structure Variation http://paduaresearch.cab.unipd.it/4930/1/tesi_dottorato_versione_finale.pdf2686 days ago
