Results for "Syntenic Regions"
Blogs
In comparative genome analysis work, we usually compare more than two genomes and looks for syntenic regions amongst them. In my research I used Evolution Highway (RH) http://eh-demo.ncs...3924 days ago
Tools to detect synteny blocks regions among multiple genomes
...same chromosome. These block regions have mostly been preserved by...ur on the same chromosome are syntenic; however, syntenic genes may or may not be "link...rved blocks and non-conserved regions to understand the mechanism an...erver can be used for finding regions syntenic across multiple genomes and...2595 days ago
Dynamic chromosome breakpoints !!!
Cell division involves the distribution of identical geneti...between multiple chromosomes or between different regions of the same chromosome. Du...pcbi.0020014). In addition the study of breakpoint regions and non-breakpoint (stable) r...3537 days ago
Calling narrow and broad peaks from ChIP-Seq data
Know about the state-of-the-art algorithms implemented in Strand NGS for detecting the binding sites of transcription factor (narrow peaks) and enriched regions of histone modification (broa...3182 days ago
Computer simulation of genetic mechanism !!
Computer simulation is the discipline of designing a model...at simulates sequence-like data over large genomic regions in large diploid populations....AMPLE An association simulator for candidate regions or genome scans http://www.ha...2959 days ago
Software and Tools to detect structure variation with long reads !!
Uncovering the connection between genetics and heritable di...evidence from split-read alignments, high-mismatch regions, and coverage analysis. Pleas...es across the entire genome instead of "signature" regions Genotyping of SVs with Illum...2592 days ago
- Ancestral sequence reconstruction (ASR)...inferCars Reconstructs contiguous regions of an ancestral genome. Given...large number of contiguous ancestral regions (CARs). ANCESTOR A web serv...s, insertions, and losses of genomic regions), and successfully accommodat...
2515 days ago
BBTools for bioinformatician !
BBMap.sh Mapping Nanopore reads BBMap.sh has a length cap of 6kbp. Reads longer...same as where the primers would bind naturally, though with highly conserved regions there should be no difference...2255 days ago
List of motif discovery tools !
In genetics, a sequence motif is a nucleoti...HOR -- Prediction of Protein Binding Regions in Disordered Proteins Find...ponding to the most highly conserved regions of proteins. CASTp -- co...apped alignments of highly conserved regions among a protein family or sup...1978 days ago
List of comparative genomics resources !
3D-GENOMICS -- A Database to Compare Struct...-- COnserved Non-coDing Orthologous Regions A database resource of devel...rved non-coding blocks from upstream regions of putative orthologous gene...and identify putative cis-regulatory regions of RefSeq Gene Orthologs....662 days ago
