3905 days ago
Hidden Markov Models, Viterbi Algorithm, Markov Chain Exploration with script
Hidden Markov Models, the Viterbi Algorithm, and CpG Islands (in VB6) Problem : The...han 200 bases) in which the frequency of the CG sequence is higher than other regions. It is also called the CpG is...3787 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
Global overview papers Next generation quantitative genetics in plants. Jiméne...tled Introduction to R and Bioconductor, held in Seattle in Dec 2010 Genomic Regions Enrichment of Annotations Too...3742 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
List of generic simulation software/tools/res...equence-like data over large genomic regions in large diploid populations....association simulator for candidate regions or genome scans http://www.ha...bination patterns over large genomic regions under various demographic mod...3700 days ago
List of In-silico Binding Site Prediction Tools
...and measuring concave surface regions on three-dimensional structur...rface features and functional regions of proteins. CASTp includes a...and anchor residues, but hot regions, defined by clusters of resid...interfaces (PPIs), which are regions of interaction between two pr...3706 days ago
Next generation sequencing in R or bioconductor environment
There are many R software and bioconductor pa...that takes a ranked list of genomic regions as input and outputs short DN...sites in a large number of enriched regions from high-throughput ChIP-chi...d ChIP-Seq data in order to identify regions bound by transcription factor...3587 days ago
Commercial and public next-gen-seq (NGS) software
Integrated solutions CLCbio Genomics Workbench - de novo and reference assembly of San...m analysis of ChIP-Seq experiments. It uses a naive algorithm for identifying regions of high coverage, which repre...3481 days ago
Software packages for next gen sequence analysis
Integrated solutions * CLCbio Genomics Workbench - de novo and reference assembly of S...m analysis of ChIP-Seq experiments. It uses a naive algorithm for identifying regions of high coverage, which repre...3205 days ago
Binding Site Prediction in Protein !
The interaction between proteins and other molecules is fundamental to all biological...sp; Binding Site Prediction ConSurf Identification of functional regions in proteins by surface-mappin...2165 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
Commercial tools Strand NGS offers many...on of genetic variants in repetitive regions” Input: Initial varian...localized micro-assembly of specific regions of interest; can do single, d...pdate- July 2014; Identifies genomic regions that are significantly &ldquo...2871 days ago