Tools to detect synteny blocks regions among multiple genomes
The synteny block (which etymologically means “on the same ribbon”) is a collection of contiguous genes located on the same chromosome. These block regions have mostly been preserved by genome rearrangements, and so synteny blocks from two related species (e.g., humans and mice) will ...Tags: Synteny, Genome, GWAS, Conserve Synteny, Synteny Blocks, Comparative Genomes, Syntenic Regions
2563 days ago
Tags: Bioinformatics, Spines, Satsuma, Synteny, Papaya, SLAP, Tools
2961 days ago
GLIBC_2.14 error with SatsumaSynteny !!
I run SatsumaSynteny on my server using following command: [jit@hm satsuma-code-0]$ ./SatsumaSynteny -q Genome/renamedG.fa -t Genome/genome_v4.fasta -o Genome/OutFile -m 128 -ni 10 -n 256 -chain_only But it kill the program with followng error: ./SatsumaSynteny: /lib64/libc.so.6: version...Tags: Satsuma, Synteny, SatsumaSynteny, BLIBC, Redhat, Linux, Server, Comparative Genomics, Alignment
2904 days ago
SATSUMA : Highly sensitive whole-genome synteny alignments.
Satsuma is a whole-genome synteny alignment program. It takes two genomes, computes alignments, and then keeps only the parts that are orthologous, i.e. following the conserved order and orientation of features, such as protein coding genes, non-coding genes, or neutral sequences. Satsuma does no...Tags: Bioinformatics, NGS, Sequence, Alignment, Synteny, Comparative genomics, Genomics
2867 days ago