Results for "System biology"
Bio-Scripts
# To follow these instructions, we'll assume your system admins have already installed these essentials: # Debian/Ubuntu system admins should run: sudo apt-...ent-dev libxml2-dev # RHEL/CentOS system admins should run: sudo yum...TH to use this Perl instead of the system...2134 days ago
- #!/usr/local/bin/perl -w # NOTE: YOU MUST CHANGE THE LINE ABOVE TO POINT TO # THE FULL PATH OF THE PERL EXECUTABLE ON YOUR SYSTEM. # System...
2683 days ago
BASH script for SelfBLAST a genome
#!/bin/bash #self BLAST a genome -- Expecting you have blast and samtools installed in your system #Author: Jitendra Narayan #USAGE: ./selfBlast.sh extract #USAGE: ./selfBlast.sh all #Common...2642 days ago
- my @ids =qw (scaffold_4 scaffold_4 scaffold_15 scaffold_40 scaffold_44 scaffold_51 scaffold_54 scaffo...; foreach my $i (@ids) { print "Working on $i\n"; mkdir $i; system ("./actor.sh $i"); system...
2456 days ago
Genetic Algorithms demonstration with word DNA in Perl
#!/usr/bin/perl -w # GA demonstration with word DNA (512 bits) use strict; use Dat...1, parent => 0, fitness => 0 }; } } __DATA__ about algorithm and biology by century come computer...2362 days ago
Perl script to find missing and move to desire folder
#!/usr/bin/perl -w use strict; use warnings; open(my $ids, "2229 days ago
- ➜ Tools git:(master) ✗ git clone git://github.com/bcgsc/bloomfilte...figure && make checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu...ALL' [nyae]? n checking build system type... x86_64-pc-linux-gnu...: --with-boost checking build system...
2141 days ago
Perl script to find the distance beetween all the contigs and scaffolds
#!/usr/bin/perl use strict; use warnings; use Bio::SeqIO; $| = 1; #Script to see the distance beetween all...}\n"; close $ofh or die "Could not close file '$tmpFile' $!"; $cnt++; system...2130 days ago
Perl script to run SATSUMA in loop !
#!/usr/bin/perl -w use strict; use File::Temp qw(tempfile); # Usage perl 1by1.pl for SATSUMA analysis # User need to set the reference multifasta file name here...2130 days ago
Install Parrot Virtual Machine !
#Parrot is a virtual machine designed to efficiently compile and execute bytecode for d...lo, I'm Configure. My job is to poke and prod your system to figure out how to build P...env.........both. auto::timespec - Does your system...1527 days ago
