Results for "TE"
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Comment on "Basic command-line to run BLAST"
Understanding the parameters https://www.arabidopsis.org/Blast/BLASToptions.jsp382 days ago
Comment on "Benchmarking Perl Module !"
...olves measuring the performance of the module in terms of its execution time and...g the following command: cpan Benchmark Write benchmark code: Write a simpl...ese function takes two arguments: the number of iterations to run and a reference...400 days ago
Comment on "A quick guide to Phred scaling"
...Phred scaling is a widely used system for representing the quality...s: Phred quality scores are represented as integers ranging from 0 t...score for each base call is calculated as follows: Q = -10 * log10...an ASCII character, with the character code equal to the Phred scor...400 days ago
Comment on "Short-read assembly using Spades !"
...ort sequencing reads. SPAdes (St. Petersburg genome assembler) is a...ead assembly. Here are the general steps for short-read assembly usi...errors or low-quality bases. This step can be performed using vario...mat. Evaluation of assembly: After running SPAdes, the next ste...400 days ago
- ...synthetic reads based on sequencing technologies such as Illumina, S...ile tool that allows users to simulate reads with different error ra...ith different read lengths, error rates, and coverage levels. The wg...Oxford Nanopore. It can also simulate different types of sequencing...
400 days ago
Comment on "How to install Perl modules manually, using CPAN command, and other quick ways"
If using conda conda create --name perlENV perlconda activate perlENV conda install -c bioconda perl-bundle-bioperl conda install -c bioconda perl-bioperl400 days ago
Comment on "How to install Perl modules manually, using CPAN command, and other quick ways"
...using which perl - it should give you the perl that's located within your conda environmen...case, conda install -c bioconda perl-lwp-simple this will definitely install into conda....400 days ago
Comment on "Calculate the significance of the difference between two trends"
Useful reading material https://statsandr.com/blog/anova-in-r/403 days ago
Comment on "Short-read assembly using Spades !"
.... It can assemble reads generated from Illumina, IonTorrent, P...loaded from the official website (http://cab.spbu.ru/software/...y should be provided in separate files for each read. Run...can view the contigs using a text editor or a genome browser....405 days ago
Comment on "Tools for Sequence translation !"
...ence into its corresponding protein sequence. This is an important step in the analysis of genomic a...including: ExPASy Translate Tool: This is a web-based too...ranslation (i.e., convert a protein sequence into its correspon...and provides a user-friendly interface for performing the analy...405 days ago
