Results for "TE"

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  • RepeatModeler

    RepeatModeler is a de-novo repeat family identification and modeling package. At the heart of RepeatModeler are two de-novo repeat finding programs ( RECON and RepeatScout ) which employ complementary computational methods for identifying repeat element boundaries and family relationships from se...

    Tags: Bioinformatics, Analysis, NGS, Repeats, TE, RepeatModeler, RECON, de-novo, family, Genome

    2779 days ago

  • Computational resources for TE discovery and TE detection

    Transposable Elements (TEs) to genome structure and evolution as well as their impact on genome sequencing, assembly, annotation and alignment has generated increasing interest in developing new methods for their computational analysis. Following are the list of resource and location for TE dis...

    Tags: Computational, resources, TE, discovery, detection, Transposable, Elements (TEs)

    2236 days ago

  • Scripts to help transposable elements consensus sequences curation https://github.com/4ureliek/ReannTE #Transposable #TE #consensus #ReannTE

    Tags: Transposable, TE, consensus, ReannTE

    1757 days ago

  • The Extensive de novo TE Annotator (EDTA)

    The EDTA package was designed to filter out false discoveries in raw TE candidates and generate a high-quality non-redundant TE library for whole-genome TE annotations. Selection of initial search programs were based on benckmarkings on the annotation performance using a manually curated TE libra...

    Tags: Extensive, de novo, TE, Annotator, EDTA

    1695 days ago