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Results for "TEs"

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• • Jitendra Narayan@admin

  

  A perl tool to conveniently parse RepeatMasker output files http://www.mobilednajournal.com/content/5/1/13 #Perl #Repeat #Transposable #NGS #Genome #TEs #Mobile

  Tags: Perl, Repeat, Transposable, NGS, Genome, TEs, Mobile

  3492 days ago

• • Jit@jit.aber

  

  Transposable elements and genome evolution https://science.nichd.nih.gov/confluence/download/attachments/72451496/2012_Fedoroff+review.pdf #Evolution #TEs

  Tags: Evolution, TEs

  3442 days ago

• • Jit@jit.aber

  

  TEannot

  We advise to run first the TEdenovo pipeline but it is not compulsory. We suppose you begin by running the TEannot pipeline on the example provided in the directory "db/" rather than directly on your own genomic sequences. Thus, from now on, the project name is "DmelChr4".  

  Tags: Bioinformatics, Analysis, NGS, TEs, TEannot, REPET, Pipeline, Repeats, Genome

  2807 days ago

• • Jit@jit.aber

  

  Identifying #repeats and #transposable elements in sequenced genomes: how to find your way through the dense forest of programs https://www.nature.com/articles/hdy2009165 #repeats #TEs

  Tags: repeats, transposable, repeats, TEs

  1769 days ago

• • Jit@jit.aber

  

  dnaPipeTE: a pipeline designed to find, annotate and quantify Transposable Elements

  dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify Transposable Elements in small samples of NGS datasets. It is very useful to quantify the proportion of TEs in newly sequenced genomes since it does not requ...

  Tags: dnaPipeTE, pipeline, find, annotate, quantify, Transposable, Elements, TEs

  1717 days ago