Results for "TF"
Users
About me: i am simple , straight forward , scientific , good observer and listener, divine, spiritual , kind , boring , respectfull , lazy , naughty (i.e i always behave as a child whom i am...3589 days ago
2594 days ago
Blogs
How to install Perl modules manually, using CPAN command, and other quick ways
.... '1 4 5' or '7 1-4 8' [] 2-16cpan[1]> o conf commitcommit: wrote '/usr/lib/perl5/5.10.0/CPAN/Config.pm'cpan[2]> quitNo history written (no histfile specified).Lockfile remove...3939 days ago
- ...popular for this kind of analysis. The EH is available online, and can be easily access and use, whereas Circos installation is not entirely straightforward. One of the most diffic...
3929 days ago
- +25 more Blogs
Bookmarks
Bioinformatics Algorithm Demonstrations and Tutorials
...nce algorithms important in bioinformatics, implemented in the spreadsheet program Microsoft Excel. Spreadsheets provide an interesting platform for demonstration of algor...3693 days ago
Next generation sequencing(NGS) books
Employing different technologies, the purpose of NGS platform is to decode the identity or modification on the nucleotides. NGS platforms evolve quickly and capture the main stream. This bookmark is created to provide NGS online books links.3617 days ago
- +94 more Bookmarks
Files
- ...s small RNA molecules known to inhibit mRNA expression of particular gene by binding improperly to 3'UTR region of a gene and hence block binding of TF /translation of gene. CpG reg...
3550 days ago
Discussion topics
Does anyone have Nanopore latest updates?
...h, personalised medicine, crop science, security/defence and more. The platform technology uses nanopores...e single molecules including DNA/RNA and proteins. With a broad patent portfolio, the Oxford Nanopore pipe...3802 days ago
- I'm new to bioinformatics and recently started learning Perl. I found several rival distributions available for Windows platform, which confuse me at the begining. I google it and...
3904 days ago
Pages
Genome Assembly Tools and Software - PART2 !!
...sembler for mate pair/paired-end reads from high throughput sequencing platforms, e.g. Illumina and SOLiD....lymorphism. Hapsembler can be used to assemble reads from a variety of platforms including Illumina and Ro...2674 days ago
Awesome perl frameworks, libraries and software - PART 2
...Perl examples ported from "Cross-Platform GUI Programming with wxWid...ramework with Perl perkinsms/Perl-GTFS - Perl modules for hand...at says "ni" to data silnrsi/font-ttf - Font::TTF Perl Module...p;- CRAN Package WriteXLS: Cross-platform Perl based R function to c...2483 days ago
- +4 more Pages
Top-level pages
- ...onships can be detected at the 20% identity level and below, a correct sequence alignment becomes very difficult, and the homology model will be doubtful. From 40 to 50% identity th...
3936 days ago
- ...where as the overlap of subproblems occur in dynamic programming. - Dynamic programming and memoization go together. The difference with straightforward recursion is in caching...
3935 days ago
- +42 more Top-level pages
Wire posts
News
- ...ports two conference series, organized regularly by members from the R community: useR! - providing a forum to the R user community - and DSC - a platform for developers of statisti...
3941 days ago
- ...e biosynthesis of short-chain alkanes. This allowed the development of platform E. coli strain capable of producing gasoline for the first time. Furthermore, this platform strain, if desired, can be...
3859 days ago
- +20 more News
Opportunity posts
- ...ons: Ph.D. in Bioinformatics. Desirable: Working experience in algorithm development and sequence analysis on Next Generation Sequencing (NGS) platform for plants as evident from...
3933 days ago
Research Project Posts for CSIR Project, Delhi
...Temporary Research Project Posts for CSIR Project, Delhi CSIR is looking for bright young candidates to get involved in building algorithms and platforms for large biological data...3893 days ago
- +43 more Opportunity posts
ResearchLabs posts
The Ontario Institute for Cancer Research (OICR) Genomics Lab , Toronto, Canada.
...at use robotics and informatics to generate high-throughput screens of DNA, RNA, protein, tissue, chemicals and other substances. The genomics platform uses cancer genome sequenc...3908 days ago
- ...CNSs), cis-regulatory modules (CRMs), transcription factor binding sites (TFBSs), transposable elements (T...notation of TEs in the fly and yeast genomes, (ii) annotation of CRMs and TFBSs in the fly genome, and (ii...
3855 days ago
- +1 more ResearchLabs posts
Video
Bioinformatics Algorithms (Part 1) with Pavel Pevzner, Phillip E. C. Compeau,
The course Bioinformatics Algorithms (Part 1) by Pavel Pevzner, Phillip E. C. Compeau, and Nikolay Vyahhi from University of California, San Diego will be offered free of charge to everyone on the Coursera platform. Sign up at http://www.coursera.org/course/bioinformatics.3859 days ago
Big genomic data on Google Cloud Platform
...gle is working with the genomics community to define a standard API for working with big genomic data sets in the cloud. Building on Google Cloud Platform, we show how to store, pro...3477 days ago
- +1 more Video
Bio-Scripts
- ...myDir or full path) $outputDir = "OutDir"; # Path to pattern file $patFile = "/home/anjana/patterns/p...le ends in .fa { print "Processing $seqFile\n"; $outFile = $seqFile; # Crea...
2905 days ago
Retrieve NCBI GenBank records with a range of accession numbers
...query => undef, outputFile => undef, database...'o|output_file=s' => \$param{outputFile}, 'd|database=s' =...) ) or !( defined( $param{outputFile} ) ) or !( defined( $...= $count; } open( my $OUTFILE, ">" . $param{outputFile}...2905 days ago
- +73 more Bio-Scripts
Tryst
Tryst with a Bioinformatician # Dr Altan Kara
Dr Altan Kara is a Bioinformatics specialist at the faculty of Gene Engineering and Biotechnology Institute at TUBITAK MAM Research Center. His research inter...2351 days ago
Groups
...mic typing, together with its interpreted nature, make it an ideal language for scripting and rapid application development in many areas on most platforms. This Python group aim t...3934 days ago
...rching the potential candidates biomarkers: - hmdb-http://www.hmdb.ca- metlin -http://metlin.scripps.edu/metabo_search_alt2.php- Metfusion: http://msbi.ipb-halle.de/MetFusion/- Chemspider-http://www....3694 days ago
Tags
TRRUST v2: an expanded reference database of human and mouse transcriptional regulatory interactions
TRRUST contains 8,444 and 6,552 TF-target regulatory relationships of 800 human TFs and 828 mouse TFs, respectively. They have been derived from 11,237 pubmed articles, which describe small-scale experimental studies of transcriptional regulations. To efficiently search for regulatory relationshi...Tags: TF, human, mouse
2315 days ago
Comments
- ...ngths, and insert sizes. SimSeq: SimSeq is a Python-based short read simulator that allows users to simulate reads from different sequencing platforms, including Illumina, PacB...
404 days ago
Comment on "Short-read assembly using Spades !"
...ler) is a popular tool for short-read assembly. It can assemble reads generated from Illumina, IonTorrent, PacBio, and Oxford Nanopore sequencing platforms. Here is a brief overview...409 days ago
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