Results for "Taxonomy"
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...ogram for the taxonomic classification of metagenomic high-throughput sequencing reads. Each read is directly assigned to a taxon within the NCBI taxonomy by comparing it to a referenc...2854 days ago
- ...interactively analyzing microbiome data. All the interactive tools you need in one application. Taxonomic analysis using the NCBI taxonomy or a customized taxonomy such as SILVA Functional ana...
2826 days ago
EUKulele: Taxonomic annotation of the unsung eukaryotic microbes
EUKulele, an open-source software tool designed to assign taxonomy to microeukaryotes detected in meta-omic samples, and complement analysis approaches in other domains by accommodating assembly output and providing concrete metrics reporting the taxonomic completeness of each sample.1211 days ago
- ...estimated completeness, GC content and genome size in the binning summary page.Users can use MEGAN or similar software on MaxBin bins to find the taxonomy of each bin after the binning...
2602 days ago
- Lifemap is an interactive tool to explore the WHOLE NCBI TAXONOMY. The concept used in Lifemap is similar to...anning. The current tree contains ALL species present in NCBI taxonomy as of October 18th, 2016: 1,1...
2567 days ago
MetaSim A Sequencing Simulator for Genomics and Metagenomics.
...genomes, the program allows the user to design a metagenome by specifying the number of genomes present at different levels of the NCBI taxonomy, and then to collect reads fr...2329 days ago
- ...l Guides: BBDuk BBMap BBMask BBMerge BBNorm CalcUniqueness Clumpify Dedupe Reformat Repair Seal Split Nextera Statistics Tadpole Taxonomy https://jgi.doe.gov/data-a...
2322 days ago
ETE 3: Reconstruction, Analysis, and Visualization of Phylogenomic Data
...(iii) calculating distances between trees of different size or including duplications, and (iv) providing seamless integration with the NCBI taxonomy database. ETE is freely ava...2252 days ago
alienness : Rapid Detection of Candidate Horizontal Gene Transfers across the Tree of Life
...inheritance. While it is prevalent in prokaryotes, HGT is less frequent in eukaryotes and particularly in Metazoa. Here, we propose Alienness, a taxonomy-aware web application availab...2231 days ago
- ...tory (described later)--------------------------------------------------------------------------- tax_id: the unique identifier provided by NCBI Taxonomy for the species or strain/iso...
1926 days ago
