Results for "Taxonomy"
Bio-Scripts
...thogen detection PathSeqBuildKmers Builds set of host reference k-mers PathSeqBuildReferenceTaxonomy Builds a taxonomy datafile of the microbe refer...2064 days ago
Pack a perl program with their dependencies on Ubuntu !
...re taxdump files !By Jit 37 days ago extracttaxdumpreadmetaxonomyncbi This is an extract of taxdump-readme.txt to be found at ftp://ftp.ncbi.nih.gov/pub/taxonomy/ Rahul Agarwal@raag...1500 days ago
Parse the NCBI taxonomy database with Perl !
use Bio::DB::Taxonomy; use warnings; my $sps="human"; # Get one from a NCBI taxonomy database my $dbh = Bio::DB::Taxonomy->new(-source => 'flatfile',...1162 days ago
Perl script to get all the descendent in a tree !
use warnings; use Bio::DB::Taxonomy; #Rotifera 10190 # Get one from a NCBI taxonomy database my $dbh = Bio::DB::Taxonomy->new(-source => 'flatfile', -directory=> "tax...1153 days ago
Perl script to check perl modules and download NCBI, BUSCO, Taonomy, Silva databases !
...th::Round', 'File::Find', 'Bio::DB::Taxonomy', 'Pod::Usage',...mp my $url = 'ftp://ftp.ncbi.nlm.nih.gov/pub/taxonomy/taxdump.tar.gz'; my $file =...taxdump; wget ftp://ftp.ncbi.nlm.nih.gov/pub/taxonomy/taxdump.tar.gz; tar xzfp taxd...1149 days ago
- ...'File::Path', 'Statistics::Distributions', 'Getopt::Long', 'Statistics::R', 'Math::Round', 'File::Find', 'Bio::DB::Taxonomy', 'Pod::Usage',...
1147 days ago
Perl script to check modules installed !
...'File::Path', 'Statistics::Distributions', 'Getopt::Long', 'Statistics::R', 'Math::Round', 'File::Find', 'Bio::DB::Taxonomy', 'Pod::Usage',...1144 days ago
Downloading mmseqs databases !
...ge: mmseqs databases [options] Name Type Taxonomy Url - UniRef100 A...wissprot tmp #In this case, since Swiss-Prot has a value yes in the Taxonomy column above, all necessary f...931 days ago
Installing Covid19 Environment !
...ansaction: \ Krona installed. You still need to manually update the taxonomy databases before Krona can generate taxonomic reports. The update script is ktUpdateTaxonomy.sh. The default location for...912 days ago
