Results for "Tetra-Nucleotide"
Blogs
Computer simulation of genetic mechanism !!
Computer simulation is the discipline of designing a model of an actual or theoretical physical/biological system, executing the model on a digital computer, and analyzing t...2965 days ago
Structural variation: the hidden genomic treasure
Genome re-sequencing projects have revealed substantial amounts of genetic variation between individuals extending beyond single nucleotide polymorphisms (SNPs) and short in...2693 days ago
- +12 more Blogs
Bookmarks
DAVI: Deep learning-based tool for alignment and single nucleotide variant identification
DAVI consists of models for both global and local alignment and for variant calling. We have evaluated the performance of DAVI against existing state-of-the-art tool sets an...1136 days ago
- The Bio.SeqLoc modules in seqloc are designed to represent positions and locations (ranges of positions) on sequences, particularly nucleotide sequences. My original motivat...
3406 days ago
- +40 more Bookmarks
Files
- Mostly FASTA file contain NNN characters, which can be replace by random A T G C character with this perl script. It also print the FASTA sequence name, N's counts, nucleotide count and percentage details at command prompt/standard output.
3856 days ago
Pages
Genome Assembly Tools and Software - PART2 !!
The genome assemblers generally take a file of short sequence reads and a file of quality-value as the input. Since the quality-value file for the high throughput short read...2676 days ago
Top-level pages
- "Bioinformatics is a science of biological predictions and analysis" -- Jitendra Narayan "The mathematical, statistical and computing methods that aim to solve biologi...
3937 days ago
List of bioinformatics open source projects/software.
Open source software is software that can be freely used, changed, and shared (in modified or unmodified form) by anyone. Open source software is made by many people, and di...3747 days ago
- +14 more Top-level pages
Wire posts
News
High Density Sheep SNP Genotyping Chip released!!!
If you are working on Sheep genomics then there is a good news for you. FarmIQ in conjunction with Illumina and the International Sheep Genomics Consortium (ISGC) are today...3887 days ago
- GenXPro GMbH is service provider for entire spectrum of nucleotide-based information of any biological sample. By combining intelligent data reduction techniques a...
3626 days ago
- +6 more News
Opportunity posts
Ph.D. Fellowship (Computational Biology/Bioinformatics) : Cork, Ireland : Cork, Ireland
Ph.D. Fellowship (18,000 euro/pa, plus tuition fees at the EU students rate) is available for four years to work on development of Bioinformatics resources for the analysis...3906 days ago
Postdoctoral Position (Bioinformatics/Computational Biology)
University College Cork LAPTI Cork-Co Cork-Ireland Postdoctoral position is available for three years to work on development of Bioinformatics resources for the analysi...3787 days ago
ResearchLabs posts
- Computer Aided Protein Structure Prediction; Identification of Vaccine Candidates (T-Epitope prediction); Analysis of Nucleotide/Protein Sequences; Development of Web Serve...
3875 days ago
Bio-Scripts
Python script to download covid genome !
#!/usr/bin/env python3 # these are the publicly available "complete" sequences # https://www.gisaid.org/ has more (1200?), but they require you to sign up import requ...1126 days ago
Download genome using NCBI esearch command line !
#Download using command line "NC_005956.1" / "CP003784.1" esearch -db nucleotide -query "NC_005956.1" | efetch -format fasta > seq1.fa esearch -db nucleotide -query "CP...1091 days ago
- +11 more Bio-Scripts
Tags
- A tetra-nucleotide is a fragment of DNA sequence with 4 bases (e.g. AGTC or TTGG). Pride et al. (2003) showed that the frequency of tetra-nucleotides in bacterial genomes contain useful, albeit weak, phylogenetic signals. Even though tetra-nucleotide analysis (TNA) utilizes the informat...
Tags: Bioinformatics, Tetra-Nucleotide, Analysis, Frequency, DNA, Phylogeny, Algorithms
2548 days ago
