3909 days ago
3908 days ago
3904 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...ement, and alignment software tools The Sequence Alignment/Map format and SAMtools. Li et al, Bioinformatics 25...ed FastQC: a quality control tool for high-throughput sequence...ed with a variety of software tools installed and ready to use....3742 days ago
List of bioinformatics open source projects/software.
...y-foundation-evolves-into-new-toolkit-net-bio.aspx A language-neutral bioinformatics toolkit built using the Microsoft...rogramming language) language toolkit Bioinformatics Learning T...al Dipolar Coupling data SAM Tools Data format (SAM) and accom...3719 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
...CDPOP is a landscape genetics tool for simulating the emergence...goryid=3283CoaSim CoaSim is a tool for simulating the coalescent...imulation Program. A software tool for testing and investigating...unt.sourceforge.net/MetaSim A tool to generate collections of sy...3699 days ago
List of In-silico Binding Site Prediction Tools
...mely fast and powerful search tool that facilitates exploration...rch. Currently it is the only tool that offers this kind of inte...ftware is available, as a web tool, free of charge for academic...gi-bin/screen2.cgi is a tool for identifying protein cavit...3706 days ago
Next generation sequencing in R or bioconductor environment
...like GenomicRanges, ShortRead, Rsamtools, etc. Documentation Gen...packages including ShortRead, Rsamtools, rtracklayer, GenomicFeature...Illumina reads. Documentation Rsamtools Rsamtools provides function...gnment data in BAM format (via Rsamtools) and associating them with g...3587 days ago
Commercial and public next-gen-seq (NGS) software
...visualization and statistics tool from SAS. They are working with NCGR to refine this tool and produce others. NextGENe...Vmatch - A versatile software tool for efficiently solving large...MapNext - MapNext: A software tool for spliced and unspliced ali...3481 days ago
3458 days ago