Results for "Tool"

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  • Scalpel

    A team from Cold Spring Harbor Laboratory has released an algorithm, called Scalpel, for finding insertions and deletions in next generation sequencing data sets. Scalpel, which is open source and available for download on SourceForge, outperformed the popular tools GATK HaplotypeCaller and ...

    Tags: Bioinformatics, Scalpel, Genetic, Variants, Discovery, Tool

    1099 days ago

  • A tool to edit and analyze biological pathways. http://www.pathvisio.org/ #Pathway #Analyse #Tool #Edit #Biological

    Tags: Pathway, Analyse, Tool, Edit, Biological

    1161 days ago

  • iPathwayGuide- most advanced, sophisticated and user-friendly pathway analysis tool http://www.advaitabio.com/ipathwayguide.html#page=page-1 #Pathway #Tool

    Tags: Pathway, Tool

    1072 days ago

  • A tool set for short variant discovery in genetic sequence data. http://genome.sph.umich.edu/wiki/Vt #Tool #VT #Variant

    Tags: Tool, VT, Variant

    1072 days ago

  • dcGOR

    An R package for analysing ontologies and protein domain annotations has been published in PLoS Computational Biology (http://dx.doi.org/10.1371/journal.pcbi.1003929). The package is distributed as part of CRAN (http://cran.r-project.org/package=dcGOR), and also at GitHub for version control.The ...

    Tags: Bioinformatics, Computational Biology, R, dcGOR, Tool, Protein, Package

    1018 days ago

  • A plagiarism checker http://smallseotools.com/plagiarism-checker/ and re-phrasing tool http://articlerewritertool.com/ #Tool #Plagiarism

    Tags: Tool, Plagiarism

    976 days ago

  • How to search for small peptide (hexapeptide) sequence ?

    How to search for small peptide (hexapeptide) sequence which are modified by single D-amino acid replacement from parent peptide sequence? Which database or tool is available to find available sequence similarity?? The parent peptide sequence is a part of human protein with all six L-amino acid ...

    Tags: Hexapeptide, Sequence, Search, Peptide, Database, Tool, Find, Similarity

    777 days ago

  • Recombination detection tool

    A program to detect recombination hotspots using population genetic data. More at https://github.com/auton1/LDhot

    Tags: Recombination, Tool, Chromosome, LDhot

    567 days ago

  • Easyfig

    Easyfig has moved to github, for newer releases of Easyfig please visit our new webpage - https://mjsull.github.io/Easyfig.  Easyfig is a Python application for creating linear comparison figures of multiple genomic loci with an easy-to-use graphical user interface (GUI). More at http://eas...

    Tags: Bioinformatics, NGS, Assembly, View, Fig, Easyfig, Tool

    481 days ago

  • Picard

    Picard is a set of command line tools for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF. These file formats are defined in the Hts-specs repository. See especially the SAM specification and the VCF specification. Note that the information on this pag...

    Tags: Bioinformatics, NGS, Assembly, BAM, SAM, CRAM, Picard, FastQC, Tool, Software

    481 days ago