Results for "Toolbox"

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  • Microscope

    Microscope Platform user documentation. The MicroScope platform is available at this URL: https://www.genoscope.cns.fr/agc/microscope

    Tags: Bioinformatics, Guide, Tutorial, Browser, MicroScope, Toolbox, Bio

    2937 days ago

  • BioToolbox

    This is a collection of libraries and high-quality end-user scripts for bioinformatic analysis, including working with gene annotation, collecting data scores from a variety of modern file formats, and conversion between file formats. The Bio::ToolBox libraries provide a unified, abstracted inter...

    Tags: Bioinformatics, Guide, Tutorial, Perl, Script, Toolbox, Bio

    2951 days ago

  • GATB : Genome Analysis Toolbox with de-Bruijn graph

    The Genome Analysis Toolbox with de-Bruijn graph (GATB) provides a set of highly efficient algorithms to analyse NGS data sets. These methods enable the analysis of data sets of any size on multi-core desktop computers, including very huge amount of reads data coming from any kind of organis...

    Tags: Bioinformatics, NGS, Assembly, Tools, Tutorial, Toolbox

    2882 days ago

  • RAVEN: a software suite for Matlab that allows for semi-automated reconstruction of genome-scale models

    The RAVEN (Reconstruction, Analysis and Visualization of Metabolic Networks) Toolbox 2 is a software suite for Matlab that allows for semi-automated reconstruction of genome-scale models (GEMs). It makes use of published models and/or KEGG, MetaCyc databases, coupled with extensive gap-filling an...

    Tags: RAVEN, Reconstruction, Analysis, Visualization, Metabolic, Networks, Toolbox, software, suite, Matlab, semi-automated, reconstruction, genome-scale, models, GEMs

    1972 days ago

  • AIRVF: a filtering toolbox for precise variant calling in Ion Torrent sequencing

    AIRVF that works on flowgram, raw and mapped reads and called variants to reduce artifact-driven false variant calls. Tests on sequencing data of standard reference material showed up to ∼98% reduction of false variants when combined to conventional public pipelines and ∼48% to the in-hou...

    Tags: AIRVF, filtering, toolbox, precise, variant, calling, Ion, Torrent, sequencing

    2279 days ago

  • d2Tools: The toolbox for counting the frequency of k-tuple from sequencing datasets and calculate the dissimilarity

    d2Tools are the toolbox for counting the frequency of K-tuple from sequencing datasets and then calculating the pairwise dissimilarity matrix between samples with the d2-style(d2/d2*/d2S representing d2/d2Star/d2shepp, respectively) measures. Hao, Dai, Eucliean, Mahattan, and Chebyshev ...

    Tags: d2Tools, toolbox, count, frequency, k-tuple, sequencing, calculate, dissimilarity

    2007 days ago