Results for "Tools"
Users
About me: I am new to Bioinformatics, and currently doing research at BHU. I am keen to learn new bioinformatics tools and techniques, and make some good friends.170 days ago
- Skills: ChIP-seq pipeline tools
3510 days ago
- +2 more Users
Blogs
How to install Perl modules manually, using CPAN command, and other quick ways
...he search perl BioPerl Output will be like as follows: bioperl - Perl tools for computational molecular b...e perl moduleslibbio-perl-run-perl - BioPerl wrappers: moduleslibbio-samtools-perl - Perl interface to SamT...3935 days ago
Five unique traits of effective computational biologist
...ioinformatics research is driven by large set of software, scripts, and tools to analyse gigantic biologica...n programming — you must also be excited about your research, the tools and technology you are using,...3935 days ago
- +42 more Blogs
Bookmarks
List of popular bioinformatics software/tools
In current genome era, our day to day work is to handle the huge geneome sequences, expression data, several other datasets. This link provide a comprehensive list of commonly used sofware/tools.3930 days ago
- Bioinformatics is developing very rapidly. With new tools and software it is, now a days, easy to analyse the large scale genomics datasets. But we need to understand the background...
3930 days ago
- +192 more Bookmarks
Files
- ...pen_format] Failed to open file temporarySamsamtools sort: can't open "temporarySa...a index...bwa index -p all_p_ctg.fa /home/urbe/Tools/OPERA-LG_v2.0.6/all_p_ctg.fa[...yDDrive/ONTdata/allONT/allONT.fasta /home/urbe/Tools/OPERA-LG_v2.0.6/all_p_ctg.fa...
2136 days ago
Discussion topics
Which are the best statistical programming languages to study for a bioinformatician?
...predicting metabolic pathways research jobs I used Matlab, SAS, SPSS, R and several Bioconductor packages. Matlab had a lot of powerful tools and was easy to use, whereas...3936 days ago
- ...l distributions available for Windows platform, which confuse me at the begining. I google it and found that Strawberry comes with additional dev tools to compile CPAN modules if ne...
3900 days ago
Pages
Bio++ : C Language libraries for your biological need
...port for codon models (including non-homogenous models),Tools for manipulating Hidden Markov Models,Improved numerical tools (numerical derivatives, param...is supported!Mixed models (beta). Molecular evolution tools Parameter estimation under m...3932 days ago
BioRuby :Ruby packages for biologist
...y is a package of Open Source Ruby code, with classes for DNA and protein sequence analysis, alignment, database parsing, and other Bioinformatics tools.BioRuby project provides an i...3932 days ago
- +10 more Pages
Top-level pages
- ...logies, the main challenge is to cope with the analysis of vast production of sequencing database through advanced bioinformatics tools. In oder to develope sotware/tools bioinformatician/ biological...
3932 days ago
- ..., development, or application of computational tools and approaches for expanding...and (3) the development and implementation of tools that enable efficient access...Several layers of analysis with bioinformatics tools are necessary to arrive from...
3932 days ago
- +47 more Top-level pages
Wire posts
News
- RCSB PDB Sept'13 Release offers following new features: - New tools to search for drugs and drug targets- Improved interface for 3D visualisation using Jmol/JSmol- An update to the...
3879 days ago
Accelerating Biology 2014:The Next Wave (18-22 February, 2014)
...bring together researchers in various domains of human health, agriculture, livestock and environment who are using advanced computational biology tools to solve scientific problems...3830 days ago
- +24 more News
Opportunity posts
Structural polymorphism analysis from NGS data
...will require bioinformatics developments and implementation of methods for accommodating the high level of repetitiveness of complex genomes. The tools will be integrated into pipel...3933 days ago
- ...llular localization and interaction. These technologies produce large amounts of raw data that can be transformed into information by software and tools developed both in academia an...
3933 days ago
- +74 more Opportunity posts
ResearchLabs posts
- ...genome project and similar projects in disease-causing organisms such as Plasmodium falciparum, which causes malaria in humans, have provided new tools for discovery in biology and...
3933 days ago
Donnelly Centre of Cellular & Biomolecular Research (CCBR), Bader Lab
...tion Detection of cell type and stage active biological processes using molecular profiles Biological pathway and network databases and analysis tools Link @ http://baderlab.org...3933 days ago
- +16 more ResearchLabs posts
Video
Bioinformatics -- Understanding of living systems through information science
...has highlighted a research field called bioinformatics. In this new field, computers and techniques from information science are not just used as tools to advance life science resea...3902 days ago
Translational Bioinformatics: Transforming 300 Billion Points of Data
...haven't been well described. The nascent field of translational bioinformatics may help. Dr. Butte's lab at Stanford University builds and applies tools that convert more than 300 bi...3895 days ago
- +5 more Video
Bio-Scripts
- (JitMetaENV) ➜ JitMeta conda install grabseqs -c louiejtaylor -c bioconda -c conda-forge Collecting package metadata (current_repodata.json): done Solving environment: done ==> WARNING: A newer version of conda exists.
1202 days ago
- ...CentOS system admins should run: sudo yum groupinstall -y 'Development Tools' sudo yum install -y expat-d...stall # Install dependencies for Ensembl API, VEP, OncoKB, and other tools we use here at MSKCC: curl -...
2129 days ago
- +37 more Bio-Scripts
Polls
Which of the following programming language is best for a bioinformatics beginner?
I will be doing NGS in the course of my research work and I will like to learn a programming language which is compatible with most bioinformatics tools or software. I basically want...3515 days ago
Which of the followings are the best place to study Bioinformatics ?
...plosion in biological data has resulted from genome projects, next generation sequencing and other 'omics' techniques. Bioinformatics provides the tools to analyse and exploit such d...3401 days ago
Tryst
Tryst with a Bioinformatician # Dr Altan Kara
...biological problem and by using bioinformatics tools this can be easily achieved.&...ke this package is, it provides lots of useful tools for comprehensive analysis an...formatics company will be developing effective tools to eliminate manipulated data...2347 days ago
Groups
...s popularity has increased substantially in recent years with the availability of huge genomic data and biological packages. Bioconductor provides tools for the analysis and comprehe...3936 days ago
...tsumoto in Japan. BioRuby is a package of Open Source Ruby code, with classes for DNA and protein sequence analysis, alignment, database parsing, tools for structural biology, and o...3905 days ago
- +2 more Groups
Tags
- deepTools addresses the challenge of handling the large amounts of data that are now routinely generated from DNA sequencing centers. To do so, deepTools contains useful modules to process the mapped reads data to create coverage files in standard bedGraph and bigWig file formats. By doing so, de...
Tags: Bioinformatics, Computational Biology, NGS, deepTools, Genome, RNA-Seq, Visualization, Tools
3450 days ago
- How cells, tissues and organisms interpret the information encoded in the genome has vital implications for our understanding of development, health and disease. Launched in 2003, the ENCyclopedia Of DNA Elements (ENCODE) project has the aim of mapping the functional elements in the human genome ...
Tags: ENCODE3, collection, research, articles, Encyclopedia, DNA, Elements, datasets, tools
1351 days ago
Comments
Comment on "Short-read assembly using Spades !"
...ases. This step can be performed using various tools such as Trimmomatic or FastQC...f the assembled genome. This can be done using tools such as QUAST or BUSCO. These...parameters used for SPAdes and the evaluation tools may vary depending on the spe...400 days ago
- There are several tools available for short read simulators that are widely used in bioinformatics research. Here are some of them: ART: The ART (short for A...
400 days ago
- +69 more Comments
