1180 days ago
2107 days ago
Palindrome Simulation commands !
...01.fasta > allPalindromeSimulated.fa 3319 ~/Tools/art_bin_MountRainier/art_illu...51 -f 100 -m 300 -s 10 -o paired_dat 3320 ~/Tools/art_bin_MountRainier/art_illu...e -x interleavedPE.fasta 3326 cd masurca; ~/Tools/MaSuRCA-3.2.3/bin/masurca sim...1698 days ago
Read a tab delimited file and search with perl
use strict; use warnings; use Data::Dumper; use Text::CSV; use IO::Handle; my $file = "/home/urbe/Tools/Alienomics_v0.1/Alienomics/output/intermediate_files/rRNA/refGene.megablast"; open my $fh, "[0]\n"; warn Dumper $row; # To see the structure }2488 days ago
Loop over with all files in a directory in bash
...Genomics/ncbi-genomes-2017-11-13/* ref=/media/ComparativeGenomics/ncbi-genomes-2017-11-13/GCA_000196735.1_ASM19673v1_genomic.fna path=/home/urbe/Tools/SATSUMA/satsuma-code-0 for f...2294 days ago
Perl script to convert fastq to fasta file
...e; my $outfile = shift or die $usage; my $factory = Bio::Factory::EMBOSS->new; my $seqret = $factory->program('seqret'); # $seqret is a Bio::Tools::Run::EMBOSSApplication objec...2214 days ago
2114 days ago
Perl script to run SATSUMA in loop !
...$seqfile=""; my $queryfile = "genome.fasta"; # Ur query genome my $tarfile = "renamedAdinetaV2.fa"; #Ur target file my $satsumaLoc="/home/urbe/Tools/SATSUMA/satsuma-code-0"; # Lo...2103 days ago
2100 days ago
2090 days ago