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Watch out: only a few files are counted in coverage statistics. Full documentation on Read the Docs. A set of tools for viral metagenomics. virmet is called with a command su...2754 days ago
- ...ld self-improving systems to analyze millions of genomes, including the Graph Genome Suite — the most advanced population genomics tools in the world.
2736 days ago
- ART is a set of simulation tools to generate synthetic next-generation sequencin...sed to test or benchmark a variety of method or tools for next-generation sequencin...rs (e.g. VarSim) for evaluating variant calling tools or methods.
2730 days ago
- ...re enriched for gene regions of interest, especially for phylogenetics. HybPiper is a suite of Python scripts that wrap and connect bioinformatics tools in order to extract target se...
2729 days ago
- Spines is a collection of software tools, developed and used by the Vertebrate Genome Biology Group at the Broad Institute. It provides basic data structures for efficient data...
2705 days ago
- ...ruction of genome sequences in ancient genome analysis is a multifaceted process. EAGER encompasses both state-of-the-art tools for each step as well as new complementary tools tailored for ancient DNA data...
2693 days ago
CISA: Contig Integrator for Sequence Assembly
...or contiguity and accuracy, compared with the assemblies generated by the state-of-the-art assemblers and the hybrid assemblies merged by existing tools. This tool is implemented in...2688 days ago
- ...and this primacy is reinforced by the growing number of full genome sequences available in public repositories. Despite this growth, bioinformatic tools available to visualize and co...
2687 days ago
e-RGA: enhanced Reference Guided Assembly of Complex Genomes
...sequencing. Despite this, some old problems have become even more difficult, de novo assembly being on top of this list. Despite efforts to design tools able to assemble, de novo, an...2684 days ago
MeGAMerge: A tool to merge assembled contigs, long reads from metagenomic sequencing runs
...Overlap Length, Identity, etc) are user-declarable at runtime. It is written to run on Linux. Requirements: You will need to have the following tools installed and in $PATH, or ad...2684 days ago
