http://bioruby.org/ - BioRuby comes with a comprehensive set of free development tools and libraries for bioinformatics and molecular biology #RubyOnRail #BioInfo
get the fasta genes using gff3 and genome.fa sequence: ~/Tools/bedtools2/bin/bedtools getfasta -fi vaga.fa -bed Adineta_vaga.v2.gff3 -fo Adineta_vaga_genes.fa