Results for "Tools"


  • GATB : Genome Analysis Toolbox with de-Bruijn graph

    The Genome Analysis Toolbox with de-Bruijn graph (GATB) provides a set of highly efficient algorithms to analyse NGS data sets. These methods enable the analysis of data sets of any size on multi-core desktop computers, including very huge amount of reads data coming from any kind of organis...

    Tags: Bioinformatics, NGS, Assembly, Tools, Tutorial, Toolbox

    452 days ago

  • Useful Babraham Bioinformatics Projects #Bioinformatics #Projects #Tools

    Tags: Bioinformatics, Projects, Tools

    430 days ago

  • Alignment software #Tools #Software #Alignment

    Tags: Tools, Software, Alignment

    430 days ago

  • Tools for Searching Repeats And Palindromic Sequences

    In genetics, the term palindrome refers to a sequence of nucleotides along a DNA (deoxyribonucleic acid) or RNA (ribonucleic acid) strand that contains the same series of nitrogenous bases regardless from which direction the strand is analyzed. Akin to a language palindrome—wherein a word o...

    Tags: Bioinformatics, Search, Repeats, Palindromic, Sequences, Tools, Software

    429 days ago

  • Stand-alone programs for Bioinformatician

    This directory contains applications for stand-alone use, built specifically for a Linux 64-bit machine. For help on the bigBed and bigWig applications see: View the file 'FOOTER' to see the usag...

    Tags: Bioinformatics, Stand-alone, Tools, Scripts, Use

    429 days ago

  • In which journals should I publish my bioinformatics software/tools?

    Until there is a radical change in the way that academic credit is given, the principal record of scientific research is still the peer-reviewed publication. Given that software is a fundamental part of doing science in the digital age, the question we are often asked is: where can I publish...

    Tags: Bioinformatics, Tools, Publish, Journals

    425 days ago

  • DarkHorse

    DarkHorse is a bioinformatic method for rapid, automated identification and ranking of phylogenetically atypical proteins on a genome-wide basis. It works by selecting potential ortholog matches from a reference database of amino acid sequences, then using these matches to calculate a lineag...

    Tags: Bioinformatics, HGT, Genes, Horizontal, Transfer, Method, Tools, DarkHorse

    397 days ago

  • CSBB-v1.0

    CSBB is a command line based bioinformatics suite to analyze biological data acquired through varied avenues of biological experiments. CSBB is implemented in Perl, while it also leverages the use of R and python in background for specific modules. Major focus of CSBB is to allow users from biolo...

    Tags: Bioinformatics, CSBB-v1.0, Tools, Modules, Packages, Analyse, Perl, R

    390 days ago

  • Bioinformatics tools and software

    USEARCH >Extreme high-throughput sequence analysis. Orders of magnitude faster than BLAST. MUSCLE >Multiple sequence alignment. Faster and more accurate than CLUSTALW.  UPARSE >OTU clustering for 16S and other marker genes. Highly accurate OTU sequences and improved diversity ...

    Tags: Bioinformatics, Analysis, Visualization, NGS, Tools, Software

    384 days ago

  • How to validate the assembly?

    I am working on assembly of new genome. I am just wondering how to validate my assembled genome? 

    Tags: Bioinformatics, NGS, Assembly, Validate, Approach, Tools

    320 days ago