Results for "Tools"

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  • List of popular bioinformatics software/tools

    In current genome era, our day to day work is to handle the huge geneome sequences, expression data, several other datasets. This link provide a comprehensive list of commonly used sofware/tools.

    Tags: Bioinformatics, SamTool, SAM, BAM, IGV, BLAT, Software, Tools

    1525 days ago

  • Bioinformatics software for biologists in the genomics era

    The genome sequencing revolution is approaching a landmark figure of 1000 completely sequenced genomes. Coupled with fast-declining, per-base sequencing costs, this influx of DNA sequence data has encouraged laboratory scientists to engage large datasets in comparative sequence analyses for makin...

    Tags: Bioinformatics, Tools

    1367 days ago

  • Software developed in pevsner lab

    DRAGON: Database Referencing of Array Genes Online SNOMAD: Standardization and Normalization of Microarray Data SNPduo: SNP Analysis Between Two Individuals SNPtrio: Analyzing and Visualizing and Inheritance Patterns in Trios SNPscan: Data Analysis and Visualization of SNP Dat...

    Tags: Bioinformatics, Cmputational Biology, Tools, Software, Pevsnerlab

    1079 days ago

  • Spines

    Spines Spines is a collection of software tools, developed and used by the Vertebrate Genome Biology Group at the Broad Institute. It provides basic data structures for efficient data manipulation (mostly genomic sequences, alignments, variation etc.), as well as specialized tool sets ...

    Tags: Bioinformatics, Spines, Satsuma, Synteny, Papaya, SLAP, Tools

    588 days ago

  • Awesome bioinformatics pipelines !

    A curated list of awesome pipeline toolkits ... https://github.com/pditommaso/awesome-pipeline

    Tags: Bioinformatics, Computational Biology, Toolkit, Pipelines, Tools

    537 days ago

  • GATB : Genome Analysis Toolbox with de-Bruijn graph

    The Genome Analysis Toolbox with de-Bruijn graph (GATB) provides a set of highly efficient algorithms to analyse NGS data sets. These methods enable the analysis of data sets of any size on multi-core desktop computers, including very huge amount of reads data coming from any kind of organis...

    Tags: Bioinformatics, NGS, Assembly, Tools, Tutorial, Toolbox

    509 days ago

  • Stand-alone programs for Bioinformatician

    This directory contains applications for stand-alone use, built specifically for a Linux 64-bit machine. For help on the bigBed and bigWig applications see:http://genome.ucsc.edu/goldenPath/help/bigBed.htmlhttp://genome.ucsc.edu/goldenPath/help/bigWig.html View the file 'FOOTER' to see the usag...

    Tags: Bioinformatics, Stand-alone, Tools, Scripts, Use

    485 days ago

  • DarkHorse

    DarkHorse is a bioinformatic method for rapid, automated identification and ranking of phylogenetically atypical proteins on a genome-wide basis. It works by selecting potential ortholog matches from a reference database of amino acid sequences, then using these matches to calculate a lineag...

    Tags: Bioinformatics, HGT, Genes, Horizontal, Transfer, Method, Tools, DarkHorse

    454 days ago

  • CSBB-v1.0

    CSBB is a command line based bioinformatics suite to analyze biological data acquired through varied avenues of biological experiments. CSBB is implemented in Perl, while it also leverages the use of R and python in background for specific modules. Major focus of CSBB is to allow users from biolo...

    Tags: Bioinformatics, CSBB-v1.0, Tools, Modules, Packages, Analyse, Perl, R

    447 days ago

  • Bioinformatics tools and software

    USEARCH >Extreme high-throughput sequence analysis. Orders of magnitude faster than BLAST. MUSCLE >Multiple sequence alignment. Faster and more accurate than CLUSTALW.  UPARSE >OTU clustering for 16S and other marker genes. Highly accurate OTU sequences and improved diversity ...

    Tags: Bioinformatics, Analysis, Visualization, NGS, Tools, Software

    441 days ago