2913 days ago
MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping
...ng tools, MOSAIK can align reads generated by all the major sequencing technologies, including Illumina, Applied Biosystems SOLiD, Roche 454, Ion Torrent and Pacific BioSciences SMRT....2869 days ago
TMAP - torrent mapping alignment program General Notes
TMAP - torrent mapping alignment program General Notes TMAP is...on, please see the TMAP version associated with a Torrent Suite release below. Get...est source code: git clone git://github.com/iontorrent/TMAP.git cd TMAP git subm...2552 days ago
Pollux: platform independent error correction of single and mixed genomes
...rpose error corrector that corrects errors introduced by Illumina, Ion Torrent, and Roche 454 sequencing tec...blished data sets, we correct 94% of Illumina MiSeq errors, 88% of Ion Torrent PGM errors, 85% of Roche 454...2505 days ago
AIRVF: a filtering toolbox for precise variant calling in Ion Torrent sequencing
AIRVF that works on flowgram, raw and mapped reads and called variants to reduce artifact-driven false variant calls. Tests on sequencing data of standard reference mat...2289 days ago