Results for "Transfer"

Tags

  • DarkHorse

    DarkHorse is a bioinformatic method for rapid, automated identification and ranking of phylogenetically atypical proteins on a genome-wide basis. It works by selecting potential ortholog matches from a reference database of amino acid sequences, then using these matches to calculate a lineag...

    Tags: Bioinformatics, HGT, Genes, Horizontal, Transfer, Method, Tools, DarkHorse

    542 days ago

  • NearHGT

    Horizontal gene transfer (HGT), the transfer of genetic material between organisms, is crucial for genetic innovation and the evolution of genome architecture. Existing HGT detection algorithms rely on a strong phylogenetic signal distinguishing the transferred sequence from ancestral (vertically...

    Tags: Bioinformatics, NearHGT, Horizontal, Gene, Transfer, Haifa

    542 days ago

  • Genome Annotation Transfer Utility (GATU)

    Genome Annotation Transfer Utility (GATU) was designed to facilitate quick, efficient annotation of similar genomes using genomes that have already been annotated. For example, whenever a new strain of SARS coronavirus is sequenced, it is possible, using GATU, to automatically annotate the new st...

    Tags: Genome, Annotation, Transfer, Utility, GATU

    201 days ago

  • DarkHorse: a method for genome-wide prediction of horizontal gene transfer

    A new approach to rapid, genome-wide identification and ranking of horizontal transfer candidate proteins is presented. The method is quantitative, reproducible, and computationally undemanding. It can be combined with genomic signature and/or phylogenetic tree-building procedures to improve accu...

    Tags: DarkHorse, method, genome-wide, prediction, horizontal, gene, transfer, HGT

    177 days ago