Results for "Transposable"

Tags

  • A perl tool to conveniently parse RepeatMasker output files http://www.mobilednajournal.com/content/5/1/13 #Perl #Repeat #Transposable #NGS #Genome #TEs #Mobile

    Tags: Perl, Repeat, Transposable, NGS, Genome, TEs, Mobile

    3465 days ago

  • dnaPipeTE: de-novo assembly & annotation Pipeline for Transposable Elements

    dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify Transposable Elements in small samples of NGS datasets. It is very useful to quantify the proportion of TEs in newly sequenced genomes since it does not requ...

    Tags: dnaPipeTE, de-novo, assembly, annotation, Pipeline, Transposable, Elements

    2308 days ago

  • Computational resources for TE discovery and TE detection

    Transposable Elements (TEs) to genome structure and evolution as well as their impact on genome sequencing, assembly, annotation and alignment has generated increasing interest in developing new methods for their computational analysis. Following are the list of resource and location for TE dis...

    Tags: Computational, resources, TE, discovery, detection, Transposable, Elements (TEs)

    2237 days ago

  • Scripts to help transposable elements consensus sequences curation https://github.com/4ureliek/ReannTE #Transposable #TE #consensus #ReannTE

    Tags: Transposable, TE, consensus, ReannTE

    1758 days ago

  • dnaPipeTE: a pipeline designed to find, annotate and quantify Transposable Elements

    dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify Transposable Elements in small samples of NGS datasets. It is very useful to quantify the proportion of TEs in newly sequenced genomes since it does not requ...

    Tags: dnaPipeTE, pipeline, find, annotate, quantify, Transposable, Elements, TEs

    1690 days ago

  • #RepExpress: A Novel #Pipeline for the Quantification and Characterization of #Transposable #Element #Expression from RNA-seq Data https://pubmed.ncbi.nlm.nih.gov/34387946/

    Tags: RepExpress, Pipeline, Transposable, Element, Expression

    946 days ago

  • HTTDB - Horizontally transferred transposable elements database

    Transposons or Transposable elements (TEs) are "mobile genes" capable of mobilization from one genomic location to another through non-homologous recombination. As this movement is mediated by its own proteins and does not contribute to the survival of the host that it inhabits, they are known as...

    Tags: HTTDB, Horizontally, transferred, transposable, elements, database

    2257 days ago

  • Identifying #repeats and #transposable elements in sequenced genomes: how to find your way through the dense forest of programs https://www.nature.com/articles/hdy2009165 #repeats #TEs

    Tags: repeats, transposable, repeats, TEs

    1742 days ago

  • RepeatModeler2: automated genomic discovery of transposable element families

    RepeatModeler2 represents a valuable addition to the genome annotation toolkit that will enhance the identification and study of TEs in eukaryotic genome sequences. RepeatModeler2 is available as source code or a containerized package under an open license (https://github.com/Dfam-consortium/Repe...

    Tags: RepeatModeler2, automated, genomic, discovery, transposable, element, families

    1579 days ago

  • McClintock: Meta-pipeline to identify transposable element insertions using next generation sequencing data

    an integrated bioinformatics pipeline for the detection of TE insertions in whole-genome shotgun data, called McClintock (https://github.com/bergmanlab/mcclintock), which automatically runs and standardizes output for multiple TE detection methods. We demonstrate the utility of McClintock by eval...

    Tags: McClintock, Meta-pipeline, identify, transposable, element, insertions, next, generation, sequencing, data

    1249 days ago