Results for "Tree"

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  • Public Databases for Bioinformatics !

    ...goldenPath/hg38/bigZips/hg38.fa.gz. For use case 2 we used the set of narrowPeak files summarized in https://github.com/wkopp/janggu_usecases/tree/master/extra/urls.txt (a...

    1102 days ago

  • ChromEvol

    ...s the rates for the possible transitions assumed by the model, infers the set of ancestral chromosome numbers, and estimates the location along the tree for which polyploidy events (...

    3351 days ago

  • MetaPred2CS

    ...ein interactions (PPIs). The methods implemented in MetaPred2CS are 2 co-evolutionary methods: in-silico two hybrid (i2h) and mirror tree (MT) methods and 4 genom...

    2583 days ago

  • Alignment of closely related whole genomes/scaffolds

    ...and low cost of current generation sequencing technologies has led to a dramatic increase in the number of sequenced genomes for species across the tree of life. This increasing volu...

    2982 days ago

  • Ensembl comparative genomics resources

    ...tained. Gene alignments are used to define Ensembl Protein Families, GeneTrees and homologies for both prot...izations are also available including synteny displays, collapsible gene tree plots, a gene family locator...

    2951 days ago

  • MEGAN6

    ...NCBI taxonomy or a customized taxonomy such as SILVA Functional analysis using InterPro2GO, SEED, eggNOG or KEGG Bar charts, word clouds, Voronoi tree maps and many other charts P...

    2804 days ago

  • iTOL: interactive Tree Of Life

    Interactive Tree Of Life is an online too...manipulation of phylogenetic trees. It provides most of the features available in other tree viewers, and offers a novel c...to several thousand leaves). Trees can be exported to several g...n upload and display personal trees and data, using the 'Data up...

    2614 days ago

  • TMAP - torrent mapping alignment program General Notes

    ...de: git clone git://github.com/iontorrent/TMAP.git cd TMAP git submodule init git submodule update https://github.com/iontorrent/TS/tree/master/Analysis/TMAP

    2553 days ago

  • WGS Celera Assembler version 8.3rc2

    ...Biosciences/pbdagcon PBDAGCON], [https://github.com/PacificBiosciences/BLASR BLASR], and parts of the [https://github.com/PacificBiosciences/FALCON/tree/v0.1.3 Falcon assembler].Full...

    2545 days ago

  • Lifemap

    ...aphy with tools like Google Maps© or Open Street Maps: exploring is done by zooming and panning.  The current tree contains ALL species present...every two weeks.  All the nodes in the tree are clickable. This displays...

    2545 days ago