Results for "Tree"

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  • iTOL: interactive Tree Of Life

    Interactive Tree Of Life is an online tool for the display and manipulation of phylogenetic trees. It provides most of the features available in other tree viewers, and offers a novel circular tree layout, which makes it easy to visualize mid-sized tree (up to several thousand leaves). Trees...

    Tags: Bioinformatics, Tree, Phylogeny, Visualization, iTOL

    2614 days ago

  • Lifemap

    Lifemap is an interactive tool to explore the WHOLE NCBI TAXONOMY. The concept used in Lifemap is similar to the one used in cartography with tools like Google Maps© or Open Street Maps: exploring is done by zooming and panning.  The current tree contains ALL species present in NCBI ...

    Tags: Bioinformatics, Lifemap, Tree, Phylogeny, Taxonomy, Draw, View, Zoom, See, France, Interactive

    2545 days ago

  • slacTree: SVG Large Annotated Circular Tree drawing

    A simple, extensible, Perl script for producing figures of large phylogenetic trees. While there are many other tree drawing programs, slacTree was originally written in 2009 to fill a need for producing publication quality figures of circular trees with more than 1000 taxa with custom annotat...

    Tags: slacTree, SVG, Large, Annotated, Circular, Tree, drawing

    2461 days ago

  • iTOL: Interactive Tree Of Life

    Interactive Tree Of Life is an online tool for the display, annotation and management of phylogenetic trees. Explore your trees directly in the browser, and annotate them with various types of data. iTOL can easily visualize trees with 50'000 or more leaves. With advanced search capabiliti...

    Tags: iTOL, Interactive, Tree, Life

    2446 days ago

  • alienness : Rapid Detection of Candidate Horizontal Gene Transfers across the Tree of Life

    Horizontal gene transfer (HGT) is the transmission of genes between organisms by other means than parental to offspring inheritance. While it is prevalent in prokaryotes, HGT is less frequent in eukaryotes and particularly in Metazoa. Here, we propose Alienness, a taxonomy-aware web application a...

    Tags: alienness, Rapid, Detection, Candidate, Horizontal, Gene, Transfers, Tree, Life

    2209 days ago

  • Environment for Tree Exploration (ETE) is a Python programming toolkit that assists in the recontruction, manipulation, analysis and visualization of phylogenetic trees

    The Environment for Tree Exploration (ETE) is a Python programming toolkit that assists in the recontruction, manipulation, analysis and visualization of phylogenetic trees (although clustering trees or any other tree-like data structure are also supported). Other tools https://github.com/shenw...

    Tags: Environment, Tree, Exploration, ETE, Python, toolkit, recontruction, manipulation, analysis, visualization, phylogenetic, trees

    1584 days ago

  • UPGMA Worked Example

    The tabs below include a walkthrough of clustering 7 biological sequences (A-G) using the Unweighted Pair-Group Method with Arithmetic mean (UPGMA) method. Note that UPGMA is actually a generic method and thus the walkthrough could apply to any objects A-G for which pairwise distances can be calc...

    Tags: UPGMA, Worked, Example, Tree, Phylogeny

    898 days ago

  • FigTree

    FigTree is designed as a graphical viewer of phylogenetic trees and as a program for producing publication-ready figures. As with most of my programs, it was written for my own needs so may not be as polished and feature-complete as a commercial program. In particular it is designed to display su...

    Tags: figtree, tree, phylogeny, draw

    2445 days ago

  • d3Network:Tools for creating D3 JavaScript network, tree, dendrogram, and Sankey graphs from R.

    Mike Bostock’s D3.js is great for creating interactive network graphs with JavaScript. The d3Network package makes it easy to create these network graphs from R. The main idea is that you should able to take an R data frame with information about the relat...

    Tags: Tools, D3, JavaScript, network, tree, dendrogram, Sankey, graphs, R

    2184 days ago

  • Ancestral Genomes: a resource for reconstructed ancestral genes and genomes across the tree of life

     Ancestral Genomes (http://ancestralgenomes.org) is a resource for comprehensive reconstructions of these ‘fossil genomes’. Comprehensive sets of protein-coding genes have been reconstructed for 78 genomes of now-extinct species that were the common ancestors of extant species fr...

    Tags: Ancestral, Genomes, resource, reconstructed, genes, genomes, across, tree, life

    1974 days ago